Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq26787 113 5e-20
seq13309 98.7 1e-15
seq8132 93.3 5e-14
seq29660 89.7 6e-13
seq12768 89.7 6e-13
seq8739 89.7 6e-13
seq3950 89.7 6e-13
seq8958 87.8 2e-12
seq26664 86.0 7e-12
seq24472 86.0 7e-12
seq23684 86.0 7e-12
seq23406 86.0 7e-12
seq12828 86.0 7e-12
seq776 86.0 7e-12
seq24155 84.2 2e-11
seq2790 84.2 2e-11
seq23938 82.4 8e-11
>seq26787
Length=21907
Score = 113 bits (124), Expect = 5e-20
Identities = 321/486 (66%), Gaps = 8/486 (2%)
Strand=Plus/Plus
Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843
|||| || || || || | || |||||||| | || |||||||||| ||| || ||
Sbjct 16334 ATCAGCTCGTTGGAGAAGGTCAGTCCAGGCATCAACCCTCGCTTCTTCAGCCAGAAAATT 16393
Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903
| |||||| || ||||||||| |||||||| || || || || | || || |
Sbjct 16394 GAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAGGCGAACGCTATCAGCCGCTCA 16453
Query 74904 GCGAACGGTGCATCGGAAGTC-ATCCAAGTCTGAGCCCATTCAGCTTT--TCGTTTGACC 74960
|| || | | || ||| ||||| || ||||| | || || ||| |||
Sbjct 16454 GCAAAGGACTCCCCGCC-GTCGATCCATTTCAACGCCCACTGCGCCTTCTTCGC--GACG 16510
Query 74961 GCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGC 75020
||| | || ||||| || |||| |||| || |||| | |||||||| |
Sbjct 16511 CAAGGAATCGTCTCGATTGCGCGGAAAAGGCGGCTTTTTTCTTTCGAATCCTTGATGTAG 16570
Query 75021 TTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGC 75079
| || | || || |||| |||| || ||||| ||| | ||| |||| | |
Sbjct 16571 GTCTCGAGCAGGAGGCTGTACATCTCGGAGTGAATGTTCTCAATCG-CGATCTGGAAGCC 16629
Query 75080 GTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTC 75139
|||||| | |||||||| || | ||| || ||||| ||| | | ||| ||||||
Sbjct 16630 GTAGAAGGCACGCGCCTCGGCTACCTGGACCTCCTTCATAAACCTGCCGGCGAGATTCTC 16689
Query 75140 CATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTC 75199
| |||||||||||| ||||||||||| || || || || |||| |||||||||||
Sbjct 16690 GAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGCGTGATGAAGTGGCGCTC 16749
Query 75200 ATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGT 75259
||| |||| | |||||| | | |||| | | ||| | ||||||| | ||
Sbjct 16750 GTCGGCAGTTAAGGCGTCCCAGTGGCGAACGTCCTGAGAGAGATCTACCTCCTCGGCTGT 16809
Query 75260 CCAGAA 75265
||||||
Sbjct 16810 CCAGAA 16815
>seq13309
Length=30306
Score = 98.7 bits (108), Expect = 1e-15
Identities = 368/563 (65%), Gaps = 22/563 (4%)
Strand=Plus/Minus
Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827
|||||| |||| |||| || ||||| || | | |||||||| | || |||||
Sbjct 6350 GCCTTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTCAATCCAGGCATCAACCCGCGCTT 6291
Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887
||||| ||| || || | |||||| || ||||||||| ||||| || || || ||
Sbjct 6290 CTTCAGCCAGAAAATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCAACGCAGGCGAA 6231
Query 74888 GGCGACAAGGCGTTGCGCGAA-CGGTGCATCGGAAGTC-ATCCAAGTCTGAGCCCATTCA 74945
|| | || | | || || | | | | | ||| ||||| || ||||| |
Sbjct 6230 CGCAATCAGCCTCTCGGCAAAGCACTCC--CCGCCGTCGATCCATTTCAACGCCCACTGC 6173
Query 74946 GCTTTTCGTTTGAC-CGCAGGGACA-GTATCGATCGCTTGGAAGAG---GCTTGCCTTCT 75000
|| || || | | |||| ||| || ||||| || |||| || |||| || |
Sbjct 6172 GCCTTC--TTCGCCACGCAAGGAATCGTGTCGATTGCACGGAACAGACGGCTT---TTTT 6118
Query 75001 CTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACT 75060
||| | |||||||| | | || | || || |||| |||| || ||||| ||
Sbjct 6117 CTTTCGAATCCTTGATGTAGGTCTCGAGCAGGAGGCTGTACATCTCGGAGTGAATGTTCT 6058
Query 75061 CGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAA 75119
| | ||| |||| | ||||||| | |||||||| || | ||| || |||||
Sbjct 6057 CAATCG-CGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCCACCTGGACCTCCTTCATG 5999
Query 75120 AAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACC 75179
|| | | ||| |||||| | |||||||||||| || |||||||| || || || ||
Sbjct 5998 AACCTGCCGGCGAGATTCTCAAGGACGATGCCGTCGGATGCGGCGAAGAAGGCGAGGACG 5939
Query 75180 ATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCC 75239
|||| ||||||||||| ||| |||| | |||||| | | |||| |
Sbjct 5938 TGCGTGATGAAGTGGCGCTCGTCGGCAGTTAAGGCGTCCCAGTGGCGAACGTCCTGAGAG 5879
Query 75240 AAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATCGCCTTT-TTGTACAAAGACCAC 75296
| ||| | ||||||| | |||||||| | || ||| |||| ||||||| |||
Sbjct 5878 AGATCTACCTCCTCGGCTGTCCAGAAGGAGGCC---TCGGCTTTCTTGTACATCTCCCAG 5822
Query 75297 AAGTCAGGGTAATTGATTGGAAA 75319
| | |||||| | |||||| ||
Sbjct 5821 ATCTGAGGGTATTCGATTGGGAA 5799
>seq8132
Length=11642
Score = 93.3 bits (102), Expect = 5e-14
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679
||||||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||
Sbjct 3545 AGACTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 3604
Query 79680 CAATTGAGCTACGAAAGC 79697
||| ||||||| ||||||
Sbjct 3605 CAACTGAGCTATGAAAGC 3622
>seq29660
Length=10551
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||| ||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 7044 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6985
Query 79684 TGAGCTACGAAAGCAA 79699
|||||||||| |||||
Sbjct 6984 TGAGCTACGAGAGCAA 6969
>seq12768
Length=46514
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 6397 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6456
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 6457 TGAGCTACGAAAGC 6470
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 6674 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6733
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 6734 TGAGCTATGAAAGC 6747
>seq8739
Length=16275
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 884 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 943
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 944 TGAGCTATGAAAGC 957
>seq3950
Length=19035
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 6655 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6714
Query 79684 TGAGCTACGAAAGCAA 79699
||||||| ||||||||
Sbjct 6715 TGAGCTATGAAAGCAA 6730
>seq8958
Length=12738
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 8403 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 8462
Query 79684 TGAGCTACGAAAGCA 79698
||||||| |||||||
Sbjct 8463 TGAGCTATGAAAGCA 8477
>seq26664
Length=19166
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 15559 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 15500
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 15499 TGAGCTATGAAAGC 15486
>seq24472
Length=4761
Score = 86.0 bits (94), Expect = 7e-12
Identities = 66/77 (86%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 3439 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3498
Query 79684 TGAGCTACGAAAGCAAA 79700
||||||| |||||| ||
Sbjct 3499 TGAGCTATGAAAGCTAA 3515
>seq23684
Length=24796
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 22555 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 22496
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 22495 TGAGCTATGAAAGC 22482
>seq23406
Length=38353
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 25932 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 25991
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 25992 TGAGCTATGAAAGC 26005
>seq12828
Length=15715
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 2709 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2650
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 2649 TGAGCTATGAAAGC 2636
>seq776
Length=28823
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 4643 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4584
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 4583 TGAGCTATGAAAGC 4570
>seq24155
Length=28007
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/78 (85%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679
||| ||||||| |||| |||| |||| ||||||||||||||||| ||||||||| ||
Sbjct 22018 AGAATGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAAGGGGTGCTCTAAC 21959
Query 79680 CAATTGAGCTACGAAAGC 79697
||| ||||||| ||||||
Sbjct 21958 CAACTGAGCTATGAAAGC 21941
>seq2790
Length=28910
Score = 84.2 bits (92), Expect = 2e-11
Identities = 65/76 (86%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 10042 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 10101
Query 79684 TGAGCTACGAAAGCAA 79699
|||||||||| |||||
Sbjct 10102 TGAGCTACGAGAGCAA 10117
>seq23938
Length=72072
Score = 82.4 bits (90), Expect = 8e-11
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 40901 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 40960
Query 79684 TGAGCTACGAAAGCA 79698
|||||||||| ||||
Sbjct 40961 TGAGCTACGAGAGCA 40975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546884954840600
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