Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq26787 113 5e-20 seq13309 98.7 1e-15 seq8132 93.3 5e-14 seq29660 89.7 6e-13 seq12768 89.7 6e-13 seq8739 89.7 6e-13 seq3950 89.7 6e-13 seq8958 87.8 2e-12 seq26664 86.0 7e-12 seq24472 86.0 7e-12 seq23684 86.0 7e-12 seq23406 86.0 7e-12 seq12828 86.0 7e-12 seq776 86.0 7e-12 seq24155 84.2 2e-11 seq2790 84.2 2e-11 seq23938 82.4 8e-11 >seq26787 Length=21907 Score = 113 bits (124), Expect = 5e-20 Identities = 321/486 (66%), Gaps = 8/486 (2%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||| || || || || | || |||||||| | || |||||||||| ||| || || Sbjct 16334 ATCAGCTCGTTGGAGAAGGTCAGTCCAGGCATCAACCCTCGCTTCTTCAGCCAGAAAATT 16393 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | |||||| || ||||||||| |||||||| || || || || | || || | Sbjct 16394 GAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAGGCGAACGCTATCAGCCGCTCA 16453 Query 74904 GCGAACGGTGCATCGGAAGTC-ATCCAAGTCTGAGCCCATTCAGCTTT--TCGTTTGACC 74960 || || | | || ||| ||||| || ||||| | || || ||| ||| Sbjct 16454 GCAAAGGACTCCCCGCC-GTCGATCCATTTCAACGCCCACTGCGCCTTCTTCGC--GACG 16510 Query 74961 GCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGC 75020 ||| | || ||||| || |||| |||| || |||| | |||||||| | Sbjct 16511 CAAGGAATCGTCTCGATTGCGCGGAAAAGGCGGCTTTTTTCTTTCGAATCCTTGATGTAG 16570 Query 75021 TTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGC 75079 | || | || || |||| |||| || ||||| ||| | ||| |||| | | Sbjct 16571 GTCTCGAGCAGGAGGCTGTACATCTCGGAGTGAATGTTCTCAATCG-CGATCTGGAAGCC 16629 Query 75080 GTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTC 75139 |||||| | |||||||| || | ||| || ||||| ||| | | ||| |||||| Sbjct 16630 GTAGAAGGCACGCGCCTCGGCTACCTGGACCTCCTTCATAAACCTGCCGGCGAGATTCTC 16689 Query 75140 CATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTC 75199 | |||||||||||| ||||||||||| || || || || |||| ||||||||||| Sbjct 16690 GAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGCGTGATGAAGTGGCGCTC 16749 Query 75200 ATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGT 75259 ||| |||| | |||||| | | |||| | | ||| | ||||||| | || Sbjct 16750 GTCGGCAGTTAAGGCGTCCCAGTGGCGAACGTCCTGAGAGAGATCTACCTCCTCGGCTGT 16809 Query 75260 CCAGAA 75265 |||||| Sbjct 16810 CCAGAA 16815 >seq13309 Length=30306 Score = 98.7 bits (108), Expect = 1e-15 Identities = 368/563 (65%), Gaps = 22/563 (4%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 |||||| |||| |||| || ||||| || | | |||||||| | || ||||| Sbjct 6350 GCCTTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTCAATCCAGGCATCAACCCGCGCTT 6291 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||||| ||| || || | |||||| || ||||||||| ||||| || || || || Sbjct 6290 CTTCAGCCAGAAAATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCAACGCAGGCGAA 6231 Query 74888 GGCGACAAGGCGTTGCGCGAA-CGGTGCATCGGAAGTC-ATCCAAGTCTGAGCCCATTCA 74945 || | || | | || || | | | | | ||| ||||| || ||||| | Sbjct 6230 CGCAATCAGCCTCTCGGCAAAGCACTCC--CCGCCGTCGATCCATTTCAACGCCCACTGC 6173 Query 74946 GCTTTTCGTTTGAC-CGCAGGGACA-GTATCGATCGCTTGGAAGAG---GCTTGCCTTCT 75000 || || || | | |||| ||| || ||||| || |||| || |||| || | Sbjct 6172 GCCTTC--TTCGCCACGCAAGGAATCGTGTCGATTGCACGGAACAGACGGCTT---TTTT 6118 Query 75001 CTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACT 75060 ||| | |||||||| | | || | || || |||| |||| || ||||| || Sbjct 6117 CTTTCGAATCCTTGATGTAGGTCTCGAGCAGGAGGCTGTACATCTCGGAGTGAATGTTCT 6058 Query 75061 CGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAA 75119 | | ||| |||| | ||||||| | |||||||| || | ||| || ||||| Sbjct 6057 CAATCG-CGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCCACCTGGACCTCCTTCATG 5999 Query 75120 AAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACC 75179 || | | ||| |||||| | |||||||||||| || |||||||| || || || || Sbjct 5998 AACCTGCCGGCGAGATTCTCAAGGACGATGCCGTCGGATGCGGCGAAGAAGGCGAGGACG 5939 Query 75180 ATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCC 75239 |||| ||||||||||| ||| |||| | |||||| | | |||| | Sbjct 5938 TGCGTGATGAAGTGGCGCTCGTCGGCAGTTAAGGCGTCCCAGTGGCGAACGTCCTGAGAG 5879 Query 75240 AAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATCGCCTTT-TTGTACAAAGACCAC 75296 | ||| | ||||||| | |||||||| | || ||| |||| ||||||| ||| Sbjct 5878 AGATCTACCTCCTCGGCTGTCCAGAAGGAGGCC---TCGGCTTTCTTGTACATCTCCCAG 5822 Query 75297 AAGTCAGGGTAATTGATTGGAAA 75319 | | |||||| | |||||| || Sbjct 5821 ATCTGAGGGTATTCGATTGGGAA 5799 >seq8132 Length=11642 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||||||||||| |||| |||| |||| ||||||||||||||||||||||||||| || Sbjct 3545 AGACTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 3604 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| ||||||| |||||| Sbjct 3605 CAACTGAGCTATGAAAGC 3622 >seq29660 Length=10551 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 7044 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6985 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 6984 TGAGCTACGAGAGCAA 6969 >seq12768 Length=46514 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 6397 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6456 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 6457 TGAGCTACGAAAGC 6470 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 6674 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6733 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 6734 TGAGCTATGAAAGC 6747 >seq8739 Length=16275 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 884 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 943 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 944 TGAGCTATGAAAGC 957 >seq3950 Length=19035 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 6655 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6714 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 6715 TGAGCTATGAAAGCAA 6730 >seq8958 Length=12738 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 8403 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 8462 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 8463 TGAGCTATGAAAGCA 8477 >seq26664 Length=19166 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 15559 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 15500 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 15499 TGAGCTATGAAAGC 15486 >seq24472 Length=4761 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3439 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3498 Query 79684 TGAGCTACGAAAGCAAA 79700 ||||||| |||||| || Sbjct 3499 TGAGCTATGAAAGCTAA 3515 >seq23684 Length=24796 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 22555 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 22496 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 22495 TGAGCTATGAAAGC 22482 >seq23406 Length=38353 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 25932 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 25991 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 25992 TGAGCTATGAAAGC 26005 >seq12828 Length=15715 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2709 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2650 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2649 TGAGCTATGAAAGC 2636 >seq776 Length=28823 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4643 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4584 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 4583 TGAGCTATGAAAGC 4570 >seq24155 Length=28007 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| ||||||| |||| |||| |||| ||||||||||||||||| ||||||||| || Sbjct 22018 AGAATGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAAGGGGTGCTCTAAC 21959 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| ||||||| |||||| Sbjct 21958 CAACTGAGCTATGAAAGC 21941 >seq2790 Length=28910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 10042 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 10101 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 10102 TGAGCTACGAGAGCAA 10117 >seq23938 Length=72072 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 40901 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 40960 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 40961 TGAGCTACGAGAGCA 40975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546884954840600