Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_028746.1 Length=44249 Score E Sequences producing significant alignments: (Bits) Value seq2 190 6e-44 >seq2 Length=12201 Score = 190 bits (210), Expect = 6e-44 Identities = 321/458 (70%), Gaps = 14/458 (3%) Strand=Plus/Plus Query 15378 AAGGAGAAGCCCAATGATGGAAATCAGACAGATGCTAGTAGGACCTAGCAAATATGGCAT 15437 ||||||| | ||| |||||||||||| | | |||| | | ||||||||||| | Sbjct 5188 AAGGAGATGTTTAATAATGGAAATCAGAAAAAATTTAGTTGATGCAAGCAAATATGGTAC 5247 Query 15438 CAAATGTCCGAATAAAATGGCACCGAAATATATTACGTTTCACAATACCTATAATGATGC 15497 || || || ||| |||| || ||| ||||| | |||||||| ||||| ||||| Sbjct 5248 TAAGTGCCCTTATACAATGAATCCAGAATTCATTACTGTCCACAATACTTATAACGATGC 5307 Query 15498 CCCAGCAGAAAATGAGATTCGC-TATATGATCGGGAACAATAACGAGGTTTCGTTCCACG 15556 ||||| | || || | | || |||||||| | || ||||| | || ||||| || Sbjct 5308 TACAGCAAATAACGA-AGTGGCTTATATGATTCGTAATGATAACCAAGTATCGTTTCATA 5366 Query 15557 TTGCTGTGGACGATATGGAAGCTGTTCAGGGCATTCCTTTTGATCGAAATGCCTGGCATT 15616 |||| || ||||||| |||||||| || || |||||||| || || || || ||||||| Sbjct 5367 TTGCGGTAGACGATAAAGAAGCTGTACAAGGTATTCCTTTAGAGCGTAACGCTTGGCATT 5426 Query 15617 GCGGAGACGGGAACGGAACAGGAAACCGTCAGTCCATCGGCGTAGAGATTTGTTA--CTC 15674 |||| || || ||| | ||||| ||| | || || || || || || ||||| ||| Sbjct 5427 GCGGTGATGGTGGCGGTAACGGAAATCGTAAATCTATTGGAGTTGAAATCTGTTACTCTC 5486 Query 15675 TAAGTCCGGCGGCAACCGCTATTACAAAGCAGAAGACCATGCGGCTATTATCATTGCCCA 15734 ||||| || || | || ||||| ||||| || || |||| ||||| || | || Sbjct 5487 TAAGT--GGTGGAGATCGATATTATAAAGCGGAGGATAATGCAGCTATCGTCGTAGCTGG 5544 Query 15735 GCTTATGAAACAGTTTTGTATTCCTATTGGAAATGTGGTTCCGCAC-CAGCA---CTGGA 15790 ||| |||||||||| |||||| ||| | || | | ||||| || || |||| Sbjct 5545 GCTCATGAAACAGTACAATATTCCAATTAGTAAAG----TTCGCACACATCAATCATGGA 5600 Query 15791 GTGGTAAATACTGCCCGCACAGAATGTTAGATGAGGGA 15828 |||| || || || || || | ||||||| || ||| Sbjct 5601 GTGGAAAGTATTGTCCTCATCGTATGTTAGCAGAAGGA 5638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141393892168854