Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_028767.1 Length=45653 Score E Sequences producing significant alignments: (Bits) Value seq2 206 8e-49 >seq2 Length=12201 Score = 206 bits (228), Expect = 8e-49 Identities = 274/376 (73%), Gaps = 6/376 (2%) Strand=Plus/Plus Query 15367 AAACGGAGGTGCTGAATGATGGAAATTAGACAGATGTTAGTTGACCCAAGCAAATATGGT 15426 ||| |||| || | ||| |||||||| ||| | | |||||||| |||||||||||||| Sbjct 5186 AAAAGGAGATGTTTAATAATGGAAATCAGAAAAAATTTAGTTGATGCAAGCAAATATGGT 5245 Query 15427 GTTAAATGCCCAAACAAGATGACACCAAAATATATTACGTTTCACAATACCTACAATGAT 15486 ||| ||||| | | |||| ||| ||| ||||| | |||||||| || || ||| Sbjct 5246 ACTAAGTGCCCTTATACAATGAATCCAGAATTCATTACTGTCCACAATACTTATAACGAT 5305 Query 15487 GCTCCAGCGGAGAATGAGATTCGC-TATATGATTGGAAACAACAGAGAAGTTAGCTTCCA 15545 ||| |||| | || || | | || ||||||||| | || | | |||| || || Sbjct 5306 GCTACAGCAAATAACGA-AGTGGCTTATATGATTCGTAATGATAACCAAGTATCGTTTCA 5364 Query 15546 CGTTGCTGTGGACGATAAAGAAGCTGTTCAGGGCATTCCTTTTGATCGAAATGCATGGCA 15605 |||| || ||||||||||||||||| || || |||||||| || || || || ||||| Sbjct 5365 TATTGCGGTAGACGATAAAGAAGCTGTACAAGGTATTCCTTTAGAGCGTAACGCTTGGCA 5424 Query 15606 TTGCGGAGATGGGAACGGAACAGGAAACCGTCAGTCCATCGGCGTAGAGATTTGTTA--T 15663 |||||| ||||| ||| | ||||| ||| | || || || || || || ||||| Sbjct 5425 TTGCGGTGATGGTGGCGGTAACGGAAATCGTAAATCTATTGGAGTTGAAATCTGTTACTC 5484 Query 15664 TCCAAGTCCGGCGGTAACCGATATTATAAGGCCGAGGACAATGCGGCTATTGTCATTGCC 15723 || |||| || || | ||||||||||| || ||||| ||||| ||||| ||| | || Sbjct 5485 TCTAAGT--GGTGGAGATCGATATTATAAAGCGGAGGATAATGCAGCTATCGTCGTAGCT 5542 Query 15724 CAGCTTATGAAACAGT 15739 ||| |||||||||| Sbjct 5543 GGGCTCATGAAACAGT 5558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145884110092110