Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_028788.1 Length=37246 Score E Sequences producing significant alignments: (Bits) Value seq2 221 3e-53 >seq2 Length=12201 Score = 221 bits (244), Expect = 3e-53 Identities = 322/453 (71%), Gaps = 4/453 (1%) Strand=Plus/Plus Query 14189 AAGGAGAAATCCAATGATGGAAATCAGAGAAATGCTAGTAGACCCAAGTAAATATGGAAT 14248 ||||||| | ||| |||||||||||| ||| |||| || |||| |||||||| | Sbjct 5188 AAGGAGATGTTTAATAATGGAAATCAGAAAAAATTTAGTTGATGCAAGCAAATATGGTAC 5247 Query 14249 TAAATGTCCGAATAAAATGGCACCGAAATATATTACGTTCCACAATACGTATAACGATGC 14308 ||| || || ||| |||| || ||| ||||| |||||||||| ||||||||||| Sbjct 5248 TAAGTGCCCTTATACAATGAATCCAGAATTCATTACTGTCCACAATACTTATAACGATGC 5307 Query 14309 TCCCGCAGAAAATGAGGTTCGTTACATGATCGGGAACAATAACGAGGTTTCGTTCCACGT 14368 | | ||| | || || || ||| ||||| | || ||||| | || ||||| || | Sbjct 5308 TACAGCAAATAACGAAGTGGCTTATATGATTCGTAATGATAACCAAGTATCGTTTCATAT 5367 Query 14369 TGCTGTGGATGATAAGGAAGCTGTTCAGGGCATTCCTTTTGATCGAAATGCCTGGCATTG 14428 ||| || || ||||| |||||||| || || |||||||| || || || || |||||||| Sbjct 5368 TGCGGTAGACGATAAAGAAGCTGTACAAGGTATTCCTTTAGAGCGTAACGCTTGGCATTG 5427 Query 14429 TGGAGACGGGAACGGGACAGGAAACCGTCAATCCATCGGCGTAGAGATTTGTTA--TTCC 14486 || || || ||| | ||||| ||| |||| || || || || || ||||| || Sbjct 5428 CGGTGATGGTGGCGGTAACGGAAATCGTAAATCTATTGGAGTTGAAATCTGTTACTCTCT 5487 Query 14487 AAGTCCGGCGGTAACCGATATTATAAGGCCGAGGACAATGCGGCTATTATCATTGCCCAG 14546 |||| || || | ||||||||||| || ||||| ||||| ||||| || | || | Sbjct 5488 AAGT--GGTGGAGATCGATATTATAAAGCGGAGGATAATGCAGCTATCGTCGTAGCTGGG 5545 Query 14547 CTTATGAAACAGTTTTGTATTCCTATTGAGAATGTGGTTCCACACCAGCACTGGAGTGGT 14606 || |||||||||| |||||| ||| || || |||| || |||||||| Sbjct 5546 CTCATGAAACAGTACAATATTCCAATTAGTAAAGTTCGCACACATCAATCATGGAGTGGA 5605 Query 14607 AAATACTGTCCGCACAGAATGTTAGATGAGGGA 14639 || || ||||| || | ||||||| || ||| Sbjct 5606 AAGTATTGTCCTCATCGTATGTTAGCAGAAGGA 5638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118997171288112