Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_028841.1 Length=44952 Score E Sequences producing significant alignments: (Bits) Value seq2 205 3e-48 >seq2 Length=12201 Score = 205 bits (226), Expect = 3e-48 Identities = 344/495 (69%), Gaps = 12/495 (2%) Strand=Plus/Plus Query 19539 AAGGAGAAGCCCAATGATGGAAATCAGACAAATGTTAGTAGACCCAAGTAAATATGGCAT 19598 ||||||| | ||| |||||||||||| ||| ||||| || |||| |||||||| | Sbjct 5188 AAGGAGATGTTTAATAATGGAAATCAGAAAAAATTTAGTTGATGCAAGCAAATATGGTAC 5247 Query 19599 TAAATGCCCGAATAAAATGGCACCGAAATATATTACGTTTCACAACACGTCCAATGATGC 19658 ||| ||||| ||| |||| || ||| ||||| | ||||| || | || ||||| Sbjct 5248 TAAGTGCCCTTATACAATGAATCCAGAATTCATTACTGTCCACAATACTTATAACGATGC 5307 Query 19659 TCCTGCAGAAAATGAGATCCGTTATATGATCGGGAATAATAATGAGGTTTCGTTCCACGT 19718 | | ||| | || || | ||||||||| | ||| |||| | || ||||| || | Sbjct 5308 TACAGCAAATAACGAAGTGGCTTATATGATTCGTAATGATAACCAAGTATCGTTTCATAT 5367 Query 19719 TGCTGTGGACGATAAGGAAGCTGTTCAGGGCATTCCTTTTGATCGTAATGCCTGGCATTG 19778 ||| || |||||||| |||||||| || || |||||||| || ||||| || |||||||| Sbjct 5368 TGCGGTAGACGATAAAGAAGCTGTACAAGGTATTCCTTTAGAGCGTAACGCTTGGCATTG 5427 Query 19779 TGGAGACGGGAACGGAACAGGTAACCGTCAGTCCATCGGCGTAGAGATTTGCTA--TTCC 19836 || || || ||| | || || ||| | || || || || || || || || || Sbjct 5428 CGGTGATGGTGGCGGTAACGGAAATCGTAAATCTATTGGAGTTGAAATCTGTTACTCTCT 5487 Query 19837 AAGTCGGGCGGAAGCCGATATTATAAGGCCGAGGACAATGCGGCTATTGTCATTGCCCAA 19896 |||| || ||| ||||||||||| || ||||| ||||| ||||| ||| | || Sbjct 5488 AAGT--GGTGGAGATCGATATTATAAAGCGGAGGATAATGCAGCTATCGTCGTAGCTGGG 5545 Query 19897 CTAATGAAACAGTTTTGCATTCCTATTGGAAATGTGGTTCCACATCAGCATTGGAGTGGT 19956 || |||||||||| ||||| ||| | || || ||||||| |||||||| Sbjct 5546 CTCATGAAACAGTACAATATTCCAATTAGTAAAGTTCGCACACATCAATCATGGAGTGGA 5605 Query 19957 AAATACTGCCCGCACAGAATGTTAGATGAGGGA----AGAATACCAAGTTTTATAGAGAG 20012 || || || || || | ||||||| || ||| |||| |||||||| || || Sbjct 5606 AAGTATTGTCCTCATCGTATGTTAGCAGAAGGACGTTGGAAT----AGTTTTATTGAAAG 5661 Query 20013 GATCAAACAAGCATA 20027 || || | ||||| Sbjct 5662 AGTCCAAAATGCATA 5676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143642199291396