Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_028983.1 Length=138877 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 7e-11 >seq2 Length=12201 Score = 82.4 bits (90), Expect = 7e-11 Identities = 118/164 (72%), Gaps = 8/164 (5%) Strand=Plus/Plus Query 80499 GCTTACATTACAGGCACTAACGTAAACTTACGTAGTGGTCCAGGTACTGGCTATTC---T 80555 |||||||||| ||| |||||| || ||||| | || || || ||||| ||| | | Sbjct 5741 GCTTACATTAATGGCGATAACGTGAATTTACGAAAAGGACCTGGAACTGGATATGCAGTT 5800 Query 80556 ATAC-TACGTCAGCTAAATGCTGGTGAAAGCTATATAGTTTGGGCAGAGGTTAATGGATG 80614 || | || || || |||| || ||| |||| ||| |||| ||| ||||| || Sbjct 5801 ATTCGTAAGTTAGGTAAA----GGAGAATGCTACCAAGTATGGGGTGAGTCAAATGGTTG 5856 Query 80615 GCTAAACTTAGGTGGCGACCAATGGGTTAAGAACGATTCTTCAT 80658 ||||||||| |||||||| || ||||| | || ||||| |||| Sbjct 5857 GCTAAACTTGGGTGGCGATCAGTGGGTATATAATGATTCATCAT 5900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444009628228440