Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_029084.1 Length=37990 Score E Sequences producing significant alignments: (Bits) Value seq2 208 2e-49 >seq2 Length=12201 Score = 208 bits (230), Expect = 2e-49 Identities = 319/453 (70%), Gaps = 4/453 (1%) Strand=Plus/Plus Query 14189 AAGGAGAAATCCAATGATGGAAATCAGAGAAATGCTAGTAGACCCAAGTAAATATGGCAT 14248 ||||||| | ||| |||||||||||| ||| |||| || |||| |||||||| | Sbjct 5188 AAGGAGATGTTTAATAATGGAAATCAGAAAAAATTTAGTTGATGCAAGCAAATATGGTAC 5247 Query 14249 CAAATGTCCGAACAAGATGACACCAAAATATATTACGTTTCACAATACGGCTAATGATGC 14308 || || || | | |||| ||| ||| ||||| | |||||||| ||| ||||| Sbjct 5248 TAAGTGCCCTTATACAATGAATCCAGAATTCATTACTGTCCACAATACTTATAACGATGC 5307 Query 14309 GCCTGCAGAAAATGAGATCCGTTATATGATCGGTAACAATAACGAGGTTTCGTTCCACGT 14368 | ||| | || || | ||||||||| |||| ||||| | || ||||| || | Sbjct 5308 TACAGCAAATAACGAAGTGGCTTATATGATTCGTAATGATAACCAAGTATCGTTTCATAT 5367 Query 14369 TGCTGTGGACGATAAGGAAGCAGTTCAGGGAATTCCTTTTGATCGAAACGCCTGGCATTG 14428 ||| || |||||||| ||||| || || || |||||||| || || ||||| |||||||| Sbjct 5368 TGCGGTAGACGATAAAGAAGCTGTACAAGGTATTCCTTTAGAGCGTAACGCTTGGCATTG 5427 Query 14429 CGGAGATGGAAACGGAACAGGAAACCGTCAATCCATCGGCGTAGAGATTTGTTA--TTCC 14486 ||| ||||| ||| | ||||| ||| |||| || || || || || ||||| || Sbjct 5428 CGGTGATGGTGGCGGTAACGGAAATCGTAAATCTATTGGAGTTGAAATCTGTTACTCTCT 5487 Query 14487 AAGTCCGGCGGTAACCGATATTATAAGGCCGAGGACAATGCGGCTATTGTCATTGCCCAA 14546 |||| || || | ||||||||||| || ||||| ||||| ||||| ||| | || Sbjct 5488 AAGT--GGTGGAGATCGATATTATAAAGCGGAGGATAATGCAGCTATCGTCGTAGCTGGG 5545 Query 14547 CTAATGAAACAGTTTTGTATTCCTATTGAGAATGTGGTTCCACACCAGCACTGGAGTGGT 14606 || |||||||||| |||||| ||| || || |||| || |||||||| Sbjct 5546 CTCATGAAACAGTACAATATTCCAATTAGTAAAGTTCGCACACATCAATCATGGAGTGGA 5605 Query 14607 AAATACTGTCCGCACAGAATGCTGGATGAAGGA 14639 || || ||||| || | ||| | | |||||| Sbjct 5606 AAGTATTGTCCTCATCGTATGTTAGCAGAAGGA 5638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121376603008128