Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq9568 98.7 9e-16
seq30174 89.7 5e-13
>seq9568
Length=20649
Score = 98.7 bits (108), Expect = 9e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676
|||||||| |||||||| || || || || ||| |||||||||||| ||||| || |
Sbjct 4522 ACATGAGCAATCATGTAAGTCAGGAGTGCATAAGAAGCAATGTTGAAAGGCACACCGAGG 4581
Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736
||||| || | || || ||||| | || || ||||||||||||||||| ||||| ||
Sbjct 4582 CCCATATCAGCGGACCGCTGATACATTTGACACGACAGCTCCCCATTCGCCACGTAAAAC 4641
Query 6737 TG 6738
||
Sbjct 4642 TG 4643
Score = 98.7 bits (108), Expect = 9e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 34607 CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATG 34666
|| || ||||| ||||||||||||||||| || || | ||||| || || | || |||
Sbjct 4643 CAGTTTTACGTGGCGAATGGGGAGCTGTCGTGTCAAATGTATCAGCGGTCCGCTGATATG 4584
Query 34667 GGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726
|| | || ||||| |||||||||||| ||| || || || || |||||||| ||||||
Sbjct 4583 GGCCTCGGTGTGCCTTTCAACATTGCTTCTTATGCACTCCTGACTTACATGATTGCTCAT 4524
Query 34727 GT 34728
||
Sbjct 4523 GT 4522
>seq30174
Length=20574
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 34607 CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATG 34666
|| || |||| ||||| ||||||||||| ||||| | ||||| || || | || |||
Sbjct 15138 CAGTTTTACGCGGCGAACGGGGAGCTGTCGTGCCAAATGTATCAGCGGTCCGCTGATATG 15197
Query 34667 GGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726
|| | || ||||| |||||||||||| ||| || || || || | |||||| ||||||
Sbjct 15198 GGCCTTGGTGTGCCTTTCAACATTGCTTCTTATGCACTCCTGACTTGCATGATTGCTCAT 15257
Query 34727 GT 34728
||
Sbjct 15258 GT 15259
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676
|||||||| |||||| | || || || || ||| |||||||||||| ||||| || |
Sbjct 15259 ACATGAGCAATCATGCAAGTCAGGAGTGCATAAGAAGCAATGTTGAAAGGCACACCAAGG 15200
Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736
||||| || | || || ||||| | ||||| ||||||||||| ||||| |||| ||
Sbjct 15199 CCCATATCAGCGGACCGCTGATACATTTGGCACGACAGCTCCCCGTTCGCCGCGTAAAAC 15140
Query 6737 TG 6738
||
Sbjct 15139 TG 15138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447991218057840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |