Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq9568 98.7 9e-16 seq30174 89.7 5e-13 >seq9568 Length=20649 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 |||||||| |||||||| || || || || ||| |||||||||||| ||||| || | Sbjct 4522 ACATGAGCAATCATGTAAGTCAGGAGTGCATAAGAAGCAATGTTGAAAGGCACACCGAGG 4581 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| || | || || ||||| | || || ||||||||||||||||| ||||| || Sbjct 4582 CCCATATCAGCGGACCGCTGATACATTTGACACGACAGCTCCCCATTCGCCACGTAAAAC 4641 Query 6737 TG 6738 || Sbjct 4642 TG 4643 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 34607 CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATG 34666 || || ||||| ||||||||||||||||| || || | ||||| || || | || ||| Sbjct 4643 CAGTTTTACGTGGCGAATGGGGAGCTGTCGTGTCAAATGTATCAGCGGTCCGCTGATATG 4584 Query 34667 GGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 || | || ||||| |||||||||||| ||| || || || || |||||||| |||||| Sbjct 4583 GGCCTCGGTGTGCCTTTCAACATTGCTTCTTATGCACTCCTGACTTACATGATTGCTCAT 4524 Query 34727 GT 34728 || Sbjct 4523 GT 4522 >seq30174 Length=20574 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 34607 CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATG 34666 || || |||| ||||| ||||||||||| ||||| | ||||| || || | || ||| Sbjct 15138 CAGTTTTACGCGGCGAACGGGGAGCTGTCGTGCCAAATGTATCAGCGGTCCGCTGATATG 15197 Query 34667 GGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 || | || ||||| |||||||||||| ||| || || || || | |||||| |||||| Sbjct 15198 GGCCTTGGTGTGCCTTTCAACATTGCTTCTTATGCACTCCTGACTTGCATGATTGCTCAT 15257 Query 34727 GT 34728 || Sbjct 15258 GT 15259 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 |||||||| |||||| | || || || || ||| |||||||||||| ||||| || | Sbjct 15259 ACATGAGCAATCATGCAAGTCAGGAGTGCATAAGAAGCAATGTTGAAAGGCACACCAAGG 15200 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| || | || || ||||| | ||||| ||||||||||| ||||| |||| || Sbjct 15199 CCCATATCAGCGGACCGCTGATACATTTGGCACGACAGCTCCCCGTTCGCCGCGTAAAAC 15140 Query 6737 TG 6738 || Sbjct 15139 TG 15138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447991218057840