Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5564 84.2 2e-11 >seq5564 Length=26244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||| || || |||||||| ||||| | || ||||| || | Sbjct 5117 ATGCAAATCTTCGTGAAGACACTGACTGGGAAGACCATTACTTTGGAGGTCGAGAGTTCA 5176 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || ||| || ||||| || ||| |||| ||| | Sbjct 5177 GATACCATTGACAAT--GTGAAGGCAAAGATTCAAGACAAGGAGGGTATTCCCCCGGATC 5234 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||| || || || | || || | | | ||| | || |||| Sbjct 5235 AGCAGAGGTTGATTTTTGCAGGGAAGCAGCTTGAGGATGGGAGGACTTTGGCAGACTACA 5294 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| || | |||||||| ||||| |||| || || Sbjct 5295 ACATCCAGAAAGAGTCAACCCTCCATTTGGTCCTGCGTCTGCGAGGAGG 5343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355652498678019