Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq9418 105 6e-18 seq45547 84.2 2e-11 >seq9418 Length=21897 Score = 105 bits (116), Expect = 6e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || || | || || | ||| || || ||| || || ||||| |||||||| Sbjct 11550 CCTCCCCTCAACCTTAGGACGAGATGGAGGGTAGACTCCTTCTGAATATTGTAATCGGCC 11491 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 | ||| || |||| || ||||| || || || || ||||| | ||||||||| |||||| Sbjct 11490 AATGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGGG 11431 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC-GTATCGCTCGACTCCA 39235 | | ||| |||||| ||| ||| |||| ||| | || || || || ||||| Sbjct 11430 -ATTCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCAATTGTGTCACTGCTCTCCA 11373 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| ||||| | ||||||||||| || || || ||||| ||||| Sbjct 11372 CCTCCAAAGTGATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 11324 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || ||||| || || ||||| | || || |||| || ||||| || || || || Sbjct 11743 CTCCTTCTGTATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCGAA 11684 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 ||||| | |||||| || |||||| | | |||||||||| ||| || |||| Sbjct 11683 GATAAGCCTCTGCTGATCCGGTGGG-ATTCCCTCTTTGTCCTGGATCTTAGCCTTGACAT 11625 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||||| |||||| || | ||||| | || || ||||| || || | Sbjct 11624 TGTCAATGGTGTCGCTGCTCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGA 11565 Query 39272 CAAAGATTTGCAT 39284 ||||||||||||| Sbjct 11564 CAAAGATTTGCAT 11552 >seq45547 Length=474 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || ||| || || ||||| || ||||| |||| || | | || ||| Sbjct 230 ACCAAATGAAGAGTGGATTCCTTCTGTATGTTGTAATCAACAAGAGTCCTGCCATCTTCA 289 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || |||||||| || | |||||||| | || || | ||| |||||| Sbjct 290 AGCTGCTTCCCTGCAAATATCAGCCTTTGCTGGTCCGGAGGGACCCCCTCCTTGTCCTGA 349 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| | || | | | | || ||| ||||| |||| |||||| | ||| Sbjct 350 ATTTTTTCCTTCATATTATCAAGGGTGTCGGAGCTTTCCACTTCCAGAGTGATAGTCTTT 409 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | || || |||||||||||||| Sbjct 410 CCAGTGAAAGTCTTTACAAAGATTTGCAT 438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429292237494461