Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5564 116 2e-21 seq247 114 9e-21 seq36798 113 3e-20 seq45547 98.7 7e-16 seq25669 95.1 8e-15 seq3328 93.3 3e-14 seq26443 91.5 1e-13 seq9418 89.7 3e-13 seq13422 84.2 1e-11 seq44841 82.4 5e-11 >seq5564 Length=26244 Score = 116 bits (128), Expect = 2e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || |||||||| ||||| || || || || | || Sbjct 5345 ATGCAGATTTTTGTGAAGACTTTGACAGGAAAAACCATCACCCTGGAGGTGGAGAACTCG 5404 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | ||||| |||||||| ||| | || ||||| || Sbjct 5405 GACACGATTGACAATGTGAAAGC-TAAAATCCAAGACAAAGAGGGTATCCCACCAGACCA 5463 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | |||| ||||| || || ||||||||||| | |||||| | | || || || Sbjct 5464 GCAGAGGCTAATCTTTGCAGGGAAGCAACTGGAAGATGGACGCACACTTGCTGACTATAA 5523 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 5524 CATTCAAAAGGAGTCCAC 5541 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| ||||| || ||||| ||||| ||||| | | Sbjct 4205 ATGCAAATATTCGTGAAAACCCTCACCGGAAAGACAATCACCCTCGAGGTTGAAAGCTCT 4264 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| ||||| | || || ||||| || || | || |||||||| Sbjct 4265 GACACTATCGACAATGTTAAAGC-CAAGATCCAGGACAAGGAGGGCATTCCACCAGATCA 4323 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || | || ||||| || || || || || || | | || || | || || || Sbjct 4324 GCAACGACTTATCTTTGCAGGAAAGCAGCTTGAGGATGGGAGAACCTTGGCTGACTATAA 4383 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 4384 CATCCAGAAGGAGTCTAC 4401 >seq247 Length=47399 Score = 114 bits (126), Expect = 9e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| || || || || ||||||||| | ||||| || | | Sbjct 33199 AATGCAGATTTTCGTGAAAACTCTGACAGGGAAGACGATCACTTTGGAAGTGGAGAGCTC 33140 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| || |||| ||| | || || ||| ||| ||||| ||||| | ||||| |||| Sbjct 33139 GGATACGATTGATAATGTGAAGAC-AAAGATTCAAGACAAGGAAGGGATTCCGCCTGATC 33081 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | || ||||| || || || || ||||| | || ||| | | || |||| Sbjct 33080 AGCAAAGGCTGATCTTTGCAGGGAAGCAGCTTGAAGATGGTCGGACTCTTGCGGACTACA 33021 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | || ||||| ||||| || | ||||| ||| | | ||||||| ||| Sbjct 33020 ATATCCAAAAGGAGTCAACTCTCCATTTGGTTCTCCGTCTGCGAGGTGGA 32971 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || || || ||||| | || ||||| || Sbjct 33881 ATGCAGATATTCGTCAAGACTCTCACCGGCAAGACAATCACCTTGGAGGTTGAAAGTTCG 33822 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || ||||| | || | || ||||| || || | ||||| || || Sbjct 33821 GACACCATCGACAACGTTAAAGCTAAGA-TTCAGGACAAGGAGGGCATCCCGCCTGACCA 33763 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| ||||||||| | ||||||| || || | | ||||||||| Sbjct 33762 GCAAAGGCTCATCTTTGCGGGCAAACAATTAGAAGACGGCCGTACCCTTGCCGATTACAA 33703 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| ||||| |||||||| || ||| Sbjct 33702 CATCCAAAAGGAGTCCACCTTGCAT 33678 >seq36798 Length=236 Score = 113 bits (124), Expect = 3e-20 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| || || || || ||||||||| | ||||| || | | Sbjct 12 AATGCAGATTTTCGTGAAAACTCTGACAGGGAAGACGATCACTTTGGAAGTGGAGAGCTC 71 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| || |||| ||| | || || ||| ||| ||||| ||||| | ||||| |||| Sbjct 72 GGATACGATTGATAATGTGAAGAC-AAAGATTCAAGACAAGGAAGGGATTCCGCCTGATC 130 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | || ||||| || || || || ||||| | || ||| | | || |||| Sbjct 131 AGCAAAGGCTGATCTTTGCAGGGAAGCAGCTTGAAGATGGTCGGACTCTTGCGGACTACA 190 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGG 23834 | || ||||| ||||| || | ||||| ||| | | ||||||| Sbjct 191 ATATCCAAAAGGAGTCAACTCTCCATTTGGTTCTCCGTCTGCGAGG 236 >seq45547 Length=474 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || |||| ||||| || |||||||| ||||| || | | Sbjct 439 AATGCAAATCTTTGTAAAGACTTTCACTGGAAAGACTATCACTCTGGAAGTGGAAAGCTC 380 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||||| || |||||||| ||||| || || || || || || | Sbjct 379 CGACACCCTTGATAATATGAAGG-AAAAAATTCAGGACAAGGAGGGGGTCCCTCCGGACC 321 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | |||||||| || || || || ||||| | | ||| | | ||||||| Sbjct 320 AGCAAAGGCTGATATTTGCAGGGAAGCAGCTTGAAGATGGCAGGACTCTTGTTGATTACA 261 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||||| || || ||||| | ||||| || Sbjct 260 ACATACAGAAGGAATCCACTCTTCATTTGGT 230 >seq25669 Length=30460 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| || || || || ||||| ||||| || || | | Sbjct 8091 ATGCAGATTTTCGTCAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCT 8150 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 8151 GACACCATCGATAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 8210 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || || || |||| || ||| | | |||||||||| Sbjct 8211 CAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTCGCCGATTACAAC 8270 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || | ||| | || || | ||| ||||||| Sbjct 8271 ATCCAGAAGGAATCGACTCTCCATCTCGTCTTGCGTTTGAGAGGAGG 8317 >seq3328 Length=37150 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || || || Sbjct 14307 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACAATCACCCTCGAGGTCGAGTCGTCG 14248 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| ||||| | ||||| || || Sbjct 14247 GACACCATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGAATCCCGCCGGACCA 14189 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || || ||||| |||| ||||| | | || ||||| Sbjct 14188 GCAGAGGCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGGCGCACCCTTGCTGACTACAA 14129 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 14128 CATCCAGAAGGAATCGAC 14111 >seq26443 Length=10536 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||| || ||||| || |||||| | || || || || Sbjct 9504 AATGCAGATCTTTGTCAAGACCCTGACCGGAAAGACAATCACTTTGGAGGTGGAGAGCAG 9445 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | ||| || || ||||| ||||| | || || || || Sbjct 9444 CGACACCATCGATAACGTGAAAGCCAAGATCCAAGACAAGGAAGGGATCCCCCCGGACCA 9385 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || || ||||| |||| ||||| || | ||||||||| Sbjct 9384 GCAGAGGCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGCCGCACCTTGGCCGATTACAA 9325 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | ||| | ||| | ||| || | || || Sbjct 9324 CATCCAGAAGGAGTCAACCCTCCATCTGGTTCTCAGGCTGAGGGGTGG 9277 >seq9418 Length=21897 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||| || || || || ||||| || || || || || Sbjct 11552 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGAGCAGC 11611 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | |||||||| || | || || ||||| Sbjct 11612 GACACCATTGACAATGTCAAGGCTAAGA-TCCAGGACAAAGAGGGAATCCCACCGGATCA 11670 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || || |||||||||| ||||| || | ||| ||||| Sbjct 11671 GCAGAGGCTTATCTTCGCCGGAAAGCAGCTGGAAGACGGCCGCACCTTGGCCGACTACAA 11730 Query 23790 CATACAAAAAGAGTCCAC 23807 |||||| || ||||| || Sbjct 11731 CATACAGAAGGAGTCGAC 11748 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || || || ||||| |||||||||||||| || || || Sbjct 10640 ATGCAGATCTTCGTTAAGACTCTTACCGGAAAGACGATCACTCTCGAGGTCGAGAGCAGT 10699 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | || || ||||| || || | || || ||||| Sbjct 10700 GACACGATCGACAACGTTAAGGC-TAAGATCCAGGACAAGGAGGGGATCCCTCCGGATCA 10758 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || || || || |||| | | || || | |||||||| Sbjct 10759 GCAGAGGTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGAAGGACCTTGGCTGATTACAA 10818 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 10819 TATCCAGAAGGAGTCGAC 10836 >seq13422 Length=48529 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || || || Sbjct 22588 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCGTCG 22647 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| ||||| | || || || || Sbjct 22648 GACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAAGGAATCCCACCGGACCA 22706 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || || | ||| | || ||||| | | || ||||| Sbjct 22707 GCAGAGGCTGATCTTCGCCGGGAAGCAGCGGGAGGCCGGCCGCACCCTCGCTGACTACAA 22766 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 22767 CATCCAGAAGGAGTCGAC 22784 >seq44841 Length=436 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/231 (69%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || | ||| ||||| || || || ||| | ||||| || | Sbjct 12 AATGCAGATTTTCGTGAAGA-CCTTACGGGCAAGACAATTACTTTGGAAGTGGAGAGTTC 70 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||| |||| ||| | || | ||||| ||||| || | ||||| ||| Sbjct 71 TGACAGCATTGATAATGTGAAGGC-GAAAATACAAGACAAGGA-----TTCCGCCTGATG 124 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACT-TTAGGCGATTAC 23787 | ||| | | |||||||| || || || |||||||| | || ||| || | ||| ||| Sbjct 125 AGCAGAGGCTGATATTTGCAGGGAAGCAGCTGGAAGATGGTCGGACTCTTTGCCGACTAC 184 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || ||||| ||||| || | ||||| ||| | | ||||||| ||| Sbjct 185 AATATCCAAAAGGAGTCAACTCTCCATTTGGTTCTCTGTCTGCGAGGTGGA 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337810228945676