Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq5564 116 2e-21
seq247 114 9e-21
seq36798 113 3e-20
seq45547 98.7 7e-16
seq25669 95.1 8e-15
seq3328 93.3 3e-14
seq26443 91.5 1e-13
seq9418 89.7 3e-13
seq13422 84.2 1e-11
seq44841 82.4 5e-11
>seq5564
Length=26244
Score = 116 bits (128), Expect = 2e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || || || | || |||||||| ||||| || || || || | ||
Sbjct 5345 ATGCAGATTTTTGTGAAGACTTTGACAGGAAAAACCATCACCCTGGAGGTGGAGAACTCG 5404
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | ||||| |||||||| ||| | || ||||| ||
Sbjct 5405 GACACGATTGACAATGTGAAAGC-TAAAATCCAAGACAAAGAGGGTATCCCACCAGACCA 5463
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | |||| ||||| || || ||||||||||| | |||||| | | || || ||
Sbjct 5464 GCAGAGGCTAATCTTTGCAGGGAAGCAACTGGAAGATGGACGCACACTTGCTGACTATAA 5523
Query 23790 CATACAAAAAGAGTCCAC 23807
||| ||||| ||||||||
Sbjct 5524 CATTCAAAAGGAGTCCAC 5541
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| ||||||||||| ||||| || ||||| ||||| ||||| | |
Sbjct 4205 ATGCAAATATTCGTGAAAACCCTCACCGGAAAGACAATCACCCTCGAGGTTGAAAGCTCT 4264
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| | || ||| ||||| | || || ||||| || || | || ||||||||
Sbjct 4265 GACACTATCGACAATGTTAAAGC-CAAGATCCAGGACAAGGAGGGCATTCCACCAGATCA 4323
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| || | || ||||| || || || || || || | | || || | || || ||
Sbjct 4324 GCAACGACTTATCTTTGCAGGAAAGCAGCTTGAGGATGGGAGAACCTTGGCTGACTATAA 4383
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 4384 CATCCAGAAGGAGTCTAC 4401
>seq247
Length=47399
Score = 114 bits (126), Expect = 9e-21
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| ||||| || || || || ||||||||| | ||||| || | |
Sbjct 33199 AATGCAGATTTTCGTGAAAACTCTGACAGGGAAGACGATCACTTTGGAAGTGGAGAGCTC 33140
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||| || |||| ||| | || || ||| ||| ||||| ||||| | ||||| ||||
Sbjct 33139 GGATACGATTGATAATGTGAAGAC-AAAGATTCAAGACAAGGAAGGGATTCCGCCTGATC 33081
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| || | | || ||||| || || || || ||||| | || ||| | | || ||||
Sbjct 33080 AGCAAAGGCTGATCTTTGCAGGGAAGCAGCTTGAAGATGGTCGGACTCTTGCGGACTACA 33021
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
| || ||||| ||||| || | ||||| ||| | | ||||||| |||
Sbjct 33020 ATATCCAAAAGGAGTCAACTCTCCATTTGGTTCTCCGTCTGCGAGGTGGA 32971
Score = 102 bits (112), Expect = 6e-17
Identities = 147/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || ||||| || || || ||||| | || ||||| ||
Sbjct 33881 ATGCAGATATTCGTCAAGACTCTCACCGGCAAGACAATCACCTTGGAGGTTGAAAGTTCG 33822
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || || ||||| | || | || ||||| || || | ||||| || ||
Sbjct 33821 GACACCATCGACAACGTTAAAGCTAAGA-TTCAGGACAAGGAGGGCATCCCGCCTGACCA 33763
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| | | || ||||| ||||||||| | ||||||| || || | | |||||||||
Sbjct 33762 GCAAAGGCTCATCTTTGCGGGCAAACAATTAGAAGACGGCCGTACCCTTGCCGATTACAA 33703
Query 23790 CATACAAAAAGAGTCCACATTACAT 23814
||| ||||| |||||||| || |||
Sbjct 33702 CATCCAAAAGGAGTCCACCTTGCAT 33678
>seq36798
Length=236
Score = 113 bits (124), Expect = 3e-20
Identities = 162/226 (72%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| ||||| || || || || ||||||||| | ||||| || | |
Sbjct 12 AATGCAGATTTTCGTGAAAACTCTGACAGGGAAGACGATCACTTTGGAAGTGGAGAGCTC 71
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||| || |||| ||| | || || ||| ||| ||||| ||||| | ||||| ||||
Sbjct 72 GGATACGATTGATAATGTGAAGAC-AAAGATTCAAGACAAGGAAGGGATTCCGCCTGATC 130
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| || | | || ||||| || || || || ||||| | || ||| | | || ||||
Sbjct 131 AGCAAAGGCTGATCTTTGCAGGGAAGCAGCTTGAAGATGGTCGGACTCTTGCGGACTACA 190
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGG 23834
| || ||||| ||||| || | ||||| ||| | | |||||||
Sbjct 191 ATATCCAAAAGGAGTCAACTCTCCATTTGGTTCTCCGTCTGCGAGG 236
>seq45547
Length=474
Score = 98.7 bits (108), Expect = 7e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || || || |||| ||||| || |||||||| ||||| || | |
Sbjct 439 AATGCAAATCTTTGTAAAGACTTTCACTGGAAAGACTATCACTCTGGAAGTGGAAAGCTC 380
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||||| |||| ||||| || |||||||| ||||| || || || || || || |
Sbjct 379 CGACACCCTTGATAATATGAAGG-AAAAAATTCAGGACAAGGAGGGGGTCCCTCCGGACC 321
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| || | | |||||||| || || || || ||||| | | ||| | | |||||||
Sbjct 320 AGCAAAGGCTGATATTTGCAGGGAAGCAGCTTGAAGATGGCAGGACTCTTGTTGATTACA 261
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819
||||||| || || ||||| | ||||| ||
Sbjct 260 ACATACAGAAGGAATCCACTCTTCATTTGGT 230
>seq25669
Length=30460
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| |||||||| || || || || ||||| ||||| || || | |
Sbjct 8091 ATGCAGATTTTCGTCAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCT 8150
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || || ||||| || || | || || || ||
Sbjct 8151 GACACCATCGATAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 8210
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || ||||||||||| || || || |||| || ||| | | ||||||||||
Sbjct 8211 CAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTCGCCGATTACAAC 8270
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || || || || || | ||| | || || | ||| |||||||
Sbjct 8271 ATCCAGAAGGAATCGACTCTCCATCTCGTCTTGCGTTTGAGAGGAGG 8317
>seq3328
Length=37150
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| || || ||||| ||||| || || || ||
Sbjct 14307 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACAATCACCCTCGAGGTCGAGTCGTCG 14248
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || || ||||| ||||| | ||||| || ||
Sbjct 14247 GACACCATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGAATCCCGCCGGACCA 14189
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || || ||||| || || ||||| |||| ||||| | | || |||||
Sbjct 14188 GCAGAGGCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGGCGCACCCTTGCTGACTACAA 14129
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || || || ||
Sbjct 14128 CATCCAGAAGGAATCGAC 14111
>seq26443
Length=10536
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || || || ||||| || ||||| || |||||| | || || || ||
Sbjct 9504 AATGCAGATCTTTGTCAAGACCCTGACCGGAAAGACAATCACTTTGGAGGTGGAGAGCAG 9445
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || | | ||| || || ||||| ||||| | || || || ||
Sbjct 9444 CGACACCATCGATAACGTGAAAGCCAAGATCCAAGACAAGGAAGGGATCCCCCCGGACCA 9385
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || || ||||| || || ||||| |||| ||||| || | |||||||||
Sbjct 9384 GCAGAGGCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGCCGCACCTTGGCCGATTACAA 9325
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| || || ||||| || | ||| | ||| | ||| || | || ||
Sbjct 9324 CATCCAGAAGGAGTCAACCCTCCATCTGGTTCTCAGGCTGAGGGGTGG 9277
>seq9418
Length=21897
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || ||||| || || || || ||||| || || || || ||
Sbjct 11552 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGAGCAGC 11611
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | || | | |||||||| || | || || |||||
Sbjct 11612 GACACCATTGACAATGTCAAGGCTAAGA-TCCAGGACAAAGAGGGAATCCCACCGGATCA 11670
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || || ||||| || || |||||||||| ||||| || | ||| |||||
Sbjct 11671 GCAGAGGCTTATCTTCGCCGGAAAGCAGCTGGAAGACGGCCGCACCTTGGCCGACTACAA 11730
Query 23790 CATACAAAAAGAGTCCAC 23807
|||||| || ||||| ||
Sbjct 11731 CATACAGAAGGAGTCGAC 11748
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||| || || || ||||| |||||||||||||| || || ||
Sbjct 10640 ATGCAGATCTTCGTTAAGACTCTTACCGGAAAGACGATCACTCTCGAGGTCGAGAGCAGT 10699
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || || |||| | || || ||||| || || | || || |||||
Sbjct 10700 GACACGATCGACAACGTTAAGGC-TAAGATCCAGGACAAGGAGGGGATCCCTCCGGATCA 10758
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || || || || || || || || |||| | | || || | ||||||||
Sbjct 10759 GCAGAGGTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGAAGGACCTTGGCTGATTACAA 10818
Query 23790 CATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 10819 TATCCAGAAGGAGTCGAC 10836
>seq13422
Length=48529
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| || || ||||| ||||| || || || ||
Sbjct 22588 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCGTCG 22647
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || || ||||| ||||| | || || || ||
Sbjct 22648 GACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAAGGAATCCCACCGGACCA 22706
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || || ||||| || || | ||| | || ||||| | | || |||||
Sbjct 22707 GCAGAGGCTGATCTTCGCCGGGAAGCAGCGGGAGGCCGGCCGCACCCTCGCTGACTACAA 22766
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 22767 CATCCAGAAGGAGTCGAC 22784
>seq44841
Length=436
Score = 82.4 bits (90), Expect = 5e-11
Identities = 160/231 (69%), Gaps = 9/231 (4%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| || | ||| ||||| || || || ||| | ||||| || |
Sbjct 12 AATGCAGATTTTCGTGAAGA-CCTTACGGGCAAGACAATTACTTTGGAAGTGGAGAGTTC 70
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|||| |||| ||| | || | ||||| ||||| || | ||||| |||
Sbjct 71 TGACAGCATTGATAATGTGAAGGC-GAAAATACAAGACAAGGA-----TTCCGCCTGATG 124
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACT-TTAGGCGATTAC 23787
| ||| | | |||||||| || || || |||||||| | || ||| || | ||| |||
Sbjct 125 AGCAGAGGCTGATATTTGCAGGGAAGCAGCTGGAAGATGGTCGGACTCTTTGCCGACTAC 184
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
|| || ||||| ||||| || | ||||| ||| | | ||||||| |||
Sbjct 185 AATATCCAAAAGGAGTCAACTCTCCATTTGGTTCTCTGTCTGCGAGGTGGA 235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337810228945676
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |