Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq26787 125 6e-24 seq11816 87.8 2e-12 >seq26787 Length=21907 Score = 125 bits (138), Expect = 6e-24 Identities = 406/622 (65%), Gaps = 9/622 (1%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603 ||||| || |||||||| |||| ||||||||||| || | ||||| ||||| || || || Sbjct 16295 AAACAGGCGAAATCACAGTGCAGACCTTCGTCTC-GCGAGATCAGCTCGTTGGAGAAGGT 16353 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 | ||| ||||| || |||| ||| || ||||| || || | | || || || || Sbjct 16354 CAGTCCAGGCATCAACCCTCGCTTCTTCAGCCAGAAAATTGAGCAGAAGCTTCCGGAGAA 16413 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 ||| || ||||| ||| ||| ||||||| | | | | | || | || | | | Sbjct 16414 GAAGATCCCTTCGACGCAGGCGAACGCTA-TCAGCCGCTCAGCAAAGGACT--CCCCGCC 16470 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | |||||||| || ||||| | || || ||| ||||| ||||| || | || || Sbjct 16471 GTCGATCCATTTCAACGCCCACTGCGCCTTCTTCGCGACGCAAGGAATCGTCTCGATTGC 16530 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 | || | |||||||| | || | || || || || | || ||||| || Sbjct 16531 GCGGAAAAGGCGGCTTTTTTCTTTCGAATCCTTGATGTAGGTCTCGAGCAGGAGGCTGTA 16590 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 ||| || || || || || || || || ||||| || ||||| ||| | || || | Sbjct 16591 CATCTCGGAGTGAATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGC 16650 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 ||| || || || || ||| || | | | || ||| || || ||||| ||| Sbjct 16651 TACCTGGACCTCCTTCATAAACCTGCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGC 16710 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGC--TTAAGTTTTTTC 5021 || || || || | || || | || |||| | ||||| ||| ||||| | | Sbjct 16711 GGCGAAGAAGGCGAGGACGTGCGTGATGAAGTGGCGCTCGTC-GGCAGTTAAG-GCGTCC 16768 Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 |||||| | | || | || | ||| || || || | ||||| || || ||||| ||| Sbjct 16769 CAGTGGCGAACGTCCTGAGAGAGATCTACCTCCTCGGCTGTCCAGAAGGAGGCTTCAGCT 16828 Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCG 5141 || |||||||| ||| || | ||| || | ||| || | ||| |||| || | Sbjct 16829 TTCTTGTACATCTCCCAGATCTGAGGGTATTCAATTGGGAACATGCAGAATCGGTCCGGG 16888 Query 5142 TTAGGTGTAAGAAGCGGTTCTT 5163 || | | |||||||| |||| Sbjct 16889 TTTGAGGCGAGAAGCGGCTCTT 16910 >seq11816 Length=7084 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||||||||| |||| || ||||||||| || ||||| ||||| ||||| ||| Sbjct 2904 CAAGCAAAATCACAGTGCAGGCCCTCGTCTCTGGATATTAGTTCATTAGAGAACGTCAAT 2963 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 || ||||| | || |||||||||||||| || || || Sbjct 2964 CCTGGCATCAGGCCCCTCTTTTTAAGCCAGAAAATGGC 3001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426797709731201