Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq26787 125 6e-24
seq11816 87.8 2e-12
>seq26787
Length=21907
Score = 125 bits (138), Expect = 6e-24
Identities = 406/622 (65%), Gaps = 9/622 (1%)
Strand=Plus/Plus
Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603
||||| || |||||||| |||| ||||||||||| || | ||||| ||||| || || ||
Sbjct 16295 AAACAGGCGAAATCACAGTGCAGACCTTCGTCTC-GCGAGATCAGCTCGTTGGAGAAGGT 16353
Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663
| ||| ||||| || |||| ||| || ||||| || || | | || || || ||
Sbjct 16354 CAGTCCAGGCATCAACCCTCGCTTCTTCAGCCAGAAAATTGAGCAGAAGCTTCCGGAGAA 16413
Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723
||| || ||||| ||| ||| ||||||| | | | | | || | || | | |
Sbjct 16414 GAAGATCCCTTCGACGCAGGCGAACGCTA-TCAGCCGCTCAGCAAAGGACT--CCCCGCC 16470
Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783
| |||||||| || ||||| | || || ||| ||||| ||||| || | || ||
Sbjct 16471 GTCGATCCATTTCAACGCCCACTGCGCCTTCTTCGCGACGCAAGGAATCGTCTCGATTGC 16530
Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843
| || | |||||||| | || | || || || || | || ||||| ||
Sbjct 16531 GCGGAAAAGGCGGCTTTTTTCTTTCGAATCCTTGATGTAGGTCTCGAGCAGGAGGCTGTA 16590
Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903
||| || || || || || || || || ||||| || ||||| ||| | || || |
Sbjct 16591 CATCTCGGAGTGAATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGC 16650
Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963
||| || || || || ||| || | | | || ||| || || ||||| |||
Sbjct 16651 TACCTGGACCTCCTTCATAAACCTGCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGC 16710
Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGC--TTAAGTTTTTTC 5021
|| || || || | || || | || |||| | ||||| ||| ||||| | |
Sbjct 16711 GGCGAAGAAGGCGAGGACGTGCGTGATGAAGTGGCGCTCGTC-GGCAGTTAAG-GCGTCC 16768
Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081
|||||| | | || | || | ||| || || || | ||||| || || ||||| |||
Sbjct 16769 CAGTGGCGAACGTCCTGAGAGAGATCTACCTCCTCGGCTGTCCAGAAGGAGGCTTCAGCT 16828
Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCG 5141
|| |||||||| ||| || | ||| || | ||| || | ||| |||| || |
Sbjct 16829 TTCTTGTACATCTCCCAGATCTGAGGGTATTCAATTGGGAACATGCAGAATCGGTCCGGG 16888
Query 5142 TTAGGTGTAAGAAGCGGTTCTT 5163
|| | | |||||||| ||||
Sbjct 16889 TTTGAGGCGAGAAGCGGCTCTT 16910
>seq11816
Length=7084
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607
|| ||||||||||| |||| || ||||||||| || ||||| ||||| ||||| |||
Sbjct 2904 CAAGCAAAATCACAGTGCAGGCCCTCGTCTCTGGATATTAGTTCATTAGAGAACGTCAAT 2963
Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645
|| ||||| | || |||||||||||||| || || ||
Sbjct 2964 CCTGGCATCAGGCCCCTCTTTTTAAGCCAGAAAATGGC 3001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426797709731201
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |