Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_031006.1 Length=161552 Score E Sequences producing significant alignments: (Bits) Value seq2 105 7e-18 >seq2 Length=12201 Score = 105 bits (116), Expect = 7e-18 Identities = 198/288 (69%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 27099 ACGACCTTCGTCTAACATACGGTGTGGGCAATATTTACCGTTACGCTCTTGGTGCGTCTT 27158 ||| ||||| |||||||||| || || ||||| || || | | ||| || || Sbjct 5641 ACGTCCTTCTGCTAACATACGATGAGGACAATACTTTCCACTCCATGATTGATGTGTGCG 5582 Query 27159 AACTTTAGAGATTGGGATATTGAAACGTACCATTAAATCTGAGATATGTTCGATAGCG-- 27216 ||||||| ||||| |||||| | || ||| | | || || | ||||||| Sbjct 5581 AACTTTACTAATTGGAATATTGTACTGTTTCATGAGCCC--AGCTACGA-CGATAGCTGC 5525 Query 27217 -TTCAACTCAGCTTTACGATAACGTTCTCCTCCACTCATAGAGTAACAGATTTCAACACC 27275 || ||| |||||| ||| || ||||| ||||| | |||||||||||||||||| || Sbjct 5524 ATTATCCTCCGCTTTATAATATCGATCTCCACCACTTAGAGAGTAACAGATTTCAACTCC 5465 Query 27276 GATAGAGTTACGGTTACCTGCACCATTACCATCTCCTGCGTGCCACGCGTTACGGTTAAA 27335 ||||| ||||| || || ||| |||||| || ||||| |||||||| | || Sbjct 5464 AATAGATTTACGATTTCCGTTACCGCCACCATCACCGCAATGCCAAGCGTTACGCTCTAA 5405 Query 27336 TGGAACTACTTGTTGAACTTCGAAATCATCGACTGCTGTATGGAACGA 27383 |||| ||||| | |||| ||| || || || |||| ||||| Sbjct 5404 AGGAATACCTTGTACAGCTTCTTTATCGTCTACCGCAATATGAAACGA 5357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516525732149440