Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_031116.1 Length=163345 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 1e-15 >seq2 Length=12201 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 27653 ACGACCTTCATCTAACATACGGTGTGGGCAATATTTACCGTTACGCTCTTGGTGAGTCTT 27712 ||| ||||| |||||||||| || || ||||| || || | | ||| || || Sbjct 5641 ACGTCCTTCTGCTAACATACGATGAGGACAATACTTTCCACTCCATGATTGATGTGTGCG 5582 Query 27713 AACTTTAGAGATTGGGATATTGAAACGTACCATTAAATCTGAGATATGCTCGATAGC--- 27769 ||||||| ||||| |||||| | || ||| | | || || | ||||||| Sbjct 5581 AACTTTACTAATTGGAATATTGTACTGTTTCATGAGCCC--AGCTACGA-CGATAGCTGC 5525 Query 27770 ATTTAACTCAGCTTTACGATAACGTTCTCCTCCACTCAGAGAGTAACAGATTTCGACACC 27829 ||| ||| |||||| ||| || ||||| ||||| ||||||||||||||||| || || Sbjct 5524 ATTATCCTCCGCTTTATAATATCGATCTCCACCACTTAGAGAGTAACAGATTTCAACTCC 5465 Query 27830 GATAGAGTTACGGTTACCTGCACCATTACCATCTCCTGCATGCCAAGCATTTCG 27883 ||||| ||||| || || ||| |||||| || ||||||||| || || Sbjct 5464 AATAGATTTACGATTTCCGTTACCGCCACCATCACCGCAATGCCAAGCGTTACG 5411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522259861116600