Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq32367 140 4e-28 seq42527 116 4e-21 seq36964 116 4e-21 seq35886 116 4e-21 seq42083 91.5 2e-13 seq1704 91.5 2e-13 seq37232 87.8 2e-12 seq37024 86.0 7e-12 >seq32367 Length=12065 Score = 140 bits (154), Expect = 4e-28 Identities = 244/350 (70%), Gaps = 5/350 (1%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||||| ||| ||||| |||||||| || |||||||| | || | |||||||| | Sbjct 2391 ACATCAGACACGCGAAGTCGCAGTGGAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGA 2450 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || || || ||||| ||||| ||||| || ||||| || |||| |||| | | ||| | Sbjct 2451 ATGTTAGCCCCGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGG-CGCAGAAGCTCCCG 2509 Query 24247 AA-AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-ACCGGCGCT 24304 | ||||| |||||||| || ||| || || | ||| | ||| | | | | || Sbjct 2510 GAGAAGAAGATTCCTTCCACACACGCGAACGCGACAAGCCGTTCCGCGAAGAAAGTATCT 2569 Query 24305 GTCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 ||| || ||||| || | ||||| ||||| ||||| |||| ||||| | || || Sbjct 2570 GTCGAGTGGATCCATTTCAGGGCCCACTCGGCTTTCTTCCTTACGCAAGGAACAGTTTCG 2629 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 || ||| ||||| | | || || || |||| || || || | | | | Sbjct 2630 ATTGCACGGAAGAGTCTGCTCTTCTCCGCGGAGTCCTTAATGTAGGTTTCTAAGAGCAAA 2689 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 || ||||||||||| || ||||| |||||||| || || ||||||||||| Sbjct 2690 CTGTACATTTCCGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAA 2739 >seq42527 Length=94160 Score = 116 bits (128), Expect = 4e-21 Identities = 394/611 (64%), Gaps = 2/611 (0%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || |||||||||||||| || |||||||| | ||| | |||||||||| Sbjct 58002 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAA 57943 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 ||||||| || ||||| || || || || || ||||| || |||| |||| | | | || Sbjct 57942 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATGG-CGCAGAAGCTCCCG 57884 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || ||||| || ||||| || || || || | || | || | | | || || Sbjct 57883 GAGAAGAAGATCCCTTCCACACAGGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGGTG 57824 Query 24306 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 | | ||||| || ||||| ||||| ||||| || || || || || || || | Sbjct 57823 GCGTCGATCCATTTCAACGCCCACTCGGCTTTCTTCTTGACGCAGGGGATGGTTTCCACG 57764 Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 || ||||| | | ||||||| || || | || || || | || || || Sbjct 57763 GCGCGGAAGAGGTTGGATTTTTCAGCGGAGTCCTTGATGTAGGTTTCTAACAGGAGGCTG 57704 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 ||||| || || || ||||| || || || || || || | |||||| | |||||| Sbjct 57703 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCTGTAGAAGGCGCGTGCCTCG 57644 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 | || ||||| | || | | | || | |||||| ||||| ||||| | Sbjct 57643 GCGGATTGGACTTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACTATCCCGTCGGAG 57584 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 24605 || || || || || | || || | || || | |||| | || || | | Sbjct 57583 GCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCGGTGAGGGAGTCC 57524 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || | || ||| |||| ||| || || ||| | ||||| || ||||| || || Sbjct 57523 CAGTGGCGGAGATCGGACGATAGATCAACCTCCTCCGCCGTCCAGAACGATGCTTCGGCT 57464 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 24725 || || ||||| | ||| || | | ||||| ||||| || || |||| || ||| Sbjct 57463 TTCTTGTACATTTCCCAAATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGG 57404 Query 24726 TTTTTTGCAAG 24736 ||| ||||| Sbjct 57403 TTTGGAGCAAG 57393 >seq36964 Length=242943 Score = 116 bits (128), Expect = 4e-21 Identities = 394/611 (64%), Gaps = 2/611 (0%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || |||||||||||||| || |||||||| | ||| | |||||||||| Sbjct 59785 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAA 59726 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 ||||||| || ||||| || || || || || ||||| || |||| |||| | | | || Sbjct 59725 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATGG-CGCAGAAGCTCCCG 59667 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || ||||| || ||||| || || || || | || | || | | | || || Sbjct 59666 GAGAAGAAGATCCCTTCCACACAGGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGGTG 59607 Query 24306 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 | | ||||| || ||||| ||||| ||||| || || || || || || || | Sbjct 59606 GCGTCGATCCATTTCAACGCCCACTCGGCTTTCTTCTTGACGCAGGGGATGGTTTCCACG 59547 Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 || ||||| | | ||||||| || || | || || || | || || || Sbjct 59546 GCGCGGAAGAGGTTGGATTTTTCAGCGGAGTCCTTGATGTAGGTTTCTAACAGGAGGCTG 59487 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 ||||| || || || ||||| || || || || || || | |||||| | |||||| Sbjct 59486 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCTGTAGAAGGCGCGTGCCTCG 59427 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 | || ||||| | || | | | || | |||||| ||||| ||||| | Sbjct 59426 GCGGATTGGACTTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACTATCCCGTCGGAG 59367 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 24605 || || || || || | || || | || || | |||| | || || | | Sbjct 59366 GCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCGGTGAGGGAGTCC 59307 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || | || ||| |||| ||| || || ||| | ||||| || ||||| || || Sbjct 59306 CAGTGGCGGAGATCGGACGATAGATCAACCTCCTCCGCCGTCCAGAACGATGCTTCGGCT 59247 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 24725 || || ||||| | ||| || | | ||||| ||||| || || |||| || ||| Sbjct 59246 TTCTTGTACATTTCCCAAATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGG 59187 Query 24726 TTTTTTGCAAG 24736 ||| ||||| Sbjct 59186 TTTGGAGCAAG 59176 >seq35886 Length=22054 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | || |||||||| || || |||||| ||||||| | | || | Sbjct 12060 GTTCCTGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTCAGACAACAAATGG 12119 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | || ||| || || ||||| | ||| |||||||| || || || | ||| || Sbjct 12120 TAGGTTTTGACAGCCGATTCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 12178 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| ||||| || | ||| | || |||| | ||||||| | || | Sbjct 12179 CATGTGCTGAGGCCTTTCCACAACCTTTCCTTGTACCTTCAAGAGGTAGGATCTCTCAAG 12238 Query 54604 AGTTTTAAAACCAAAATA 54621 ||||| ||||||||||| Sbjct 12239 GGTTTTGAAACCAAAATA 12256 >seq42083 Length=66024 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | ||| || | ||| | || | || ||| |||| || ||| Sbjct 46253 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAACACGCGCAGCATGGGAACAACACC 46194 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||| | ||||| || ||| || || || || |||||||||| || || || Sbjct 46193 ATTGGAAGTCCCATTAGTTCCGCGAATGTAACTGCCCATGGCACGAATGTTGTGAACAGA 46134 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || |||||| ||| || | || || || || |||||||| || Sbjct 46133 AACACCAATTCCTCCTGCCGATTTGCTAATGACAGCACACTCCTTCAAAGTATCATAAAT 46074 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 ||||||||||||||||| ||||| Sbjct 46073 CCCCTCTATACTATCATCTTTCATG 46049 >seq1704 Length=114806 Score = 91.5 bits (100), Expect = 2e-13 Identities = 378/588 (64%), Gaps = 10/588 (2%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || |||||||||||||| || |||||||| | || | |||||||| | Sbjct 97654 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGA 97595 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 ||||||| || ||||| || || || ||||| | ||| || || | |||| | | | || Sbjct 97594 ACGTGAGCCCCGGCATGAGACCGCGTTTTTTCAACCAGAAGATCG-CGCAGAAGCTCCCG 97536 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG---GCG 24302 || ||||| || ||||| || || ||||||| | | |||| | | || Sbjct 97535 GAGAAGAAGATCCCTTCCACGCAGGCGAAGGCAACCA--CCCGCTCCGCGAAGGAATCCG 97478 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 || | | ||||| || ||||| ||||| ||||| || || || || || || Sbjct 97477 ATG-CGTCGATCCATTTCATCGCCCACTCGGCTTTCTTCGCGACGCAGGGGATGGTTTCG 97419 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 | || | ||||| || ||| || | || || | || || || | || || Sbjct 97418 ACGGCGTGGAAGAGGCGGTGTTTCTCGGTGGAGTCCTTGATGTAGGTTTCTAACAGGAGG 97359 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || ||||| || || || ||||| || ||||| || || || |||||||| | || Sbjct 97358 CTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGTGCT 97299 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 |||| || || |||||| | || | | | || | |||||| || || ||||| Sbjct 97298 TCGGCGATTTGGACTTCTTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCGTCG 97239 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTT 24601 ||| || || || || | || || | || || | |||| | | || | || Sbjct 97238 GAGGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCGT-TGAGGGA 97180 Query 24602 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 24661 | ||| || || || | || | || |||||||| | ||||| || || || Sbjct 97179 GTCCCAGTCGCGGAGGTCGTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAGGAGGCGAG 97120 Query 24662 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || || || ||||| | |||||| || | ||||| ||||| || || Sbjct 97119 GGCTTTCTTGTACATTTGCCAGATTTCGGGGTATTGGATTGGGAACAT 97072 >seq37232 Length=10575 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| |||||| || ||||| ||||| || |||||||| | ||| || |||||||||| Sbjct 7166 ACAACAAACAAGCAAAATCACAGTGAAGCCCCTCGTCACGTGAAATCAACTCGTTGGAAA 7107 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 ||||||| || ||||| || || || || || ||||| || || | | || | | | || Sbjct 7106 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATCG-CACAGAAGCTCCCG 7048 Query 24246 GAAAAGAAAATTCCTTCTAC 24265 || ||||| || ||||| || Sbjct 7047 GAGAAGAAGATCCCTTCCAC 7028 >seq37024 Length=156878 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || |||||||||||||| || |||||||| | || | |||||||| | Sbjct 305 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGA 246 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 ||||||| || ||||| || || || ||||| | ||| || || | |||| | | | || Sbjct 245 ACGTGAGCCCCGGCATGAGACCGCGTTTTTTCAACCAGAAGATCG-CGCAGAAGCTCCCG 187 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 24279 || ||||| || ||||| || || ||||||| Sbjct 186 GAGAAGAAGATCCCTTCCACGCAGGCGAAGGCAA 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593391609534720