Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq39663 98.7 9e-16 seq14423 98.7 9e-16 seq41040 96.9 3e-15 seq14855 89.7 4e-13 seq32376 82.4 7e-11 >seq39663 Length=443811 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| ||||||||||| ||||| || ||| ||| |||| || || Sbjct 345484 ATGCAGATCTTTGTCAAGACATTGACGGGTAAAACAATCACCCTCGAGGTGGAATCCTCA 345425 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || || ||||| || | || |||||| Sbjct 345424 GACACCATTGATAATGTGAAGGCGAAGATCCAGGACAAAGAGGGCATCCCACCAGATCAG 345365 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| || || ||||| || |||||||| || ||| | || | ||||||||||| Sbjct 345364 CAAAGGCTGATTTTTGCTGGTAAACAACTCGAGGATGGAAGGACCCTCGCCGATTACAAC 345305 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| || || ||||| |||| | ||||| |||| || Sbjct 345304 ATCCAGAAGGAGTCCACCCTTCATTTGGTTCTGCGATTGAGAGGCGG 345258 >seq14423 Length=23748 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || |||||||| ||| ||| ||| || | Sbjct 11866 ATGCAAATTTTTGTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTTGAATCCTCG 11925 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || || |||||||| || | || ||| || Sbjct 11926 GACACCATTGACAATGTCAAGGCGAAGATCCAGGATAAAGAGGGCATCCCTCCAGACCAG 11985 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||| ||||| || ||||| || || ||| | || | || ||||||||| Sbjct 11986 CAGAGGCTTATTTTTGCCGGGAAACAGCTTGAGGATGGAAGGACCCTAGCTGATTACAAT 12045 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| || || |||||| ||||| | ||||| |||| || Sbjct 12046 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGATTGAGAGGTGG 12092 >seq41040 Length=490441 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || || || ||| | ||| |||||| ||||| ||||| || ||||||||| Sbjct 178888 AAAATTCAAGACAAGGAGGGTATTCCCCCAGATCAGCAAAGGCTTATTTTCGCGGGCAAA 178829 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||| || ||| | |||| |||| ||||| || || ||||| || || ||||| ||| Sbjct 178828 CAACTTGAGGATGGCCGAACTCTGGCAGATTATAACATCCAGAAAGAGTCAACTCTCCAC 178769 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 | ||||| ||| | || || || Sbjct 178768 CTTGTGTTGCGACTCCGTGGTGG 178746 >seq14855 Length=14869 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || ||||| || |||||||| ||| ||| ||| || || Sbjct 13235 ATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTTGAATCCTCA 13176 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || || ||||| ||| | || ||||| Sbjct 13175 GACACTATCGATAATGTCAAGGCGAAGATCCAAGACAAAGAGGGTATTCCTCCGGATCAG 13116 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | || ||||| || || || ||||| ||| | || | || |||||||| Sbjct 13115 CAAAGGTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACCCTTGCTGATTACAAC 13056 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||||||||| ||||| ||||| | ||||| |||| || Sbjct 13055 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTCGATTGAGAGGTGG 13009 >seq32376 Length=6472 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || || || ||||| || |||| || Sbjct 311 ATGCAAATTTTTGTCAAGACCTTGACAGGAAAGACAATTACTTTGGAGGTGGAAAGTTCA 252 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||| ||| ||||| || || | || |||||| Sbjct 251 GATACTATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGGCATCCCGCCAGATCAG 192 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || || || || |||||| | |||| | || ||||| || Sbjct 191 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAAGATGGTAGAACTCTTGCTGATTATAAC 132 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||||||||| |||||| | || |||| || || Sbjct 131 ATTCAGAAGGAGTCTACTTTGCATTTGGTCTTGCG 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428103882579920