Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq14423 95.1 1e-14 seq39663 89.7 4e-13 seq41040 87.8 1e-12 seq14855 86.0 5e-12 seq40108 82.4 6e-11 >seq14423 Length=23748 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| || ||||| || |||||||| ||| ||| ||| || | Sbjct 11866 ATGCAAATTTTTGTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTTGAATCCTCG 11925 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || ||||| || || |||||||| || | || ||| || Sbjct 11926 GACACCATTGACAATGTCAAGGCGAAGATCCAGGATAAAGAGGGCATCCCTCCAGACCAG 11985 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||| ||||| || ||||| | || ||| | || | || ||||||||| Sbjct 11986 CAGAGGCTTATTTTTGCCGGGAAACAGCTTGAGGATGGAAGGACCCTAGCTGATTACAAT 12045 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||| || || |||||| ||||| | ||||| |||| || Sbjct 12046 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGATTGAGAGGTGG 12092 >seq39663 Length=443811 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| ||||||||||| ||||| || ||| ||| |||| || || Sbjct 345484 ATGCAGATCTTTGTCAAGACATTGACGGGTAAAACAATCACCCTCGAGGTGGAATCCTCA 345425 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || || || ||||| || | || |||||| Sbjct 345424 GACACCATTGATAATGTGAAGGCGAAGATCCAGGACAAAGAGGGCATCCCACCAGATCAG 345365 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| || || ||||| || |||||| | || ||| | || | ||||||||||| Sbjct 345364 CAAAGGCTGATTTTTGCTGGTAAACAACTCGAGGATGGAAGGACCCTCGCCGATTACAAC 345305 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||| || || ||||| |||| | ||||| |||| || Sbjct 345304 ATCCAGAAGGAGTCCACCCTTCATTTGGTTCTGCGATTGAGAGGCGG 345258 >seq41040 Length=490441 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || || || ||| | ||| |||||| ||||| ||||| || ||||||||| Sbjct 178888 AAAATTCAAGACAAGGAGGGTATTCCCCCAGATCAGCAAAGGCTTATTTTCGCGGGCAAA 178829 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | || ||| | |||| |||| ||||| || || || || || || ||||| ||| Sbjct 178828 CAACTTGAGGATGGCCGAACTCTGGCAGATTATAACATCCAGAAAGAGTCAACTCTCCAC 178769 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 | ||||| ||| | || || || Sbjct 178768 CTTGTGTTGCGACTCCGTGGTGG 178746 >seq14855 Length=14869 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| || ||||| || |||||||| ||| ||| ||| || || Sbjct 13235 ATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTTGAATCCTCA 13176 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || || || ||||| ||| | || ||||| Sbjct 13175 GACACTATCGATAATGTCAAGGCGAAGATCCAAGACAAAGAGGGTATTCCTCCGGATCAG 13116 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | || ||||| || || || |||| ||| | || | || |||||||| Sbjct 13115 CAAAGGTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACCCTTGCTGATTACAAC 13056 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||||||||| ||||| ||||| | ||||| |||| || Sbjct 13055 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTCGATTGAGAGGTGG 13009 >seq40108 Length=192235 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| || || || || || ||||||||| || |||| | | Sbjct 160775 ATGCAAATTTTTGTCAAGACCTTAACAGGAAAGACCATTACCTTAGAGGTGGAAAGCTCT 160834 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || | || ||| || || || || ||| | ||| ||| || Sbjct 160835 GATACGATTGATAATGTGAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 160894 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||||| || || || || || ||||||||| || |||| ||||||||| Sbjct 160895 CAGCGACTTATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACACTGGCAGATTACAAT 160954 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 |||||||||||||| ||||| || Sbjct 160955 ATTCAAAAGGAATCCACTCTGCA 160977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410574187160096