Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq7383 107 3e-18 seq14855 104 3e-17 seq14423 86.0 9e-12 >seq7383 Length=6982 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || |||||||| | ||| ||||| || ||| |||||||| Sbjct 942 GTTCCTCCCCTGAGCCTCAAGACCAAATGAAGAGTCGATTCCTTTTGTATGTTATAATCA 883 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | || ||| || | || || || ||||||||||| ||||||||||||||| Sbjct 882 GCAAGAGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATCAACCTTTGCTGATCCGGA 823 Query 146168 GGAATTCCTTCTTTATC 146184 || || ||||| || || Sbjct 822 GGGATGCCTTCCTTGTC 806 >seq14855 Length=14869 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | |||||||| | |||||||| || || || ||||| | | Sbjct 13009 CCACCTCTCAATCGAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCA 13068 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || | || || |||||||||||||| |||||||||||||||||| Sbjct 13069 AGGGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAAATCAACCTTTGCTGATCCGGAGGA 13128 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||| ||||| Sbjct 13129 ATACCCTCTTTGTCTTG 13145 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || ||||| || | ||||| || || || |||||||||||| Sbjct 12325 CCACCACGAAGCCGCAAAACCAAGTGCAGTGTAGACTCCTTCTGGATGTTATAATCTGAA 12384 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || || || || |||||||| || | ||| |||||||||||||| Sbjct 12385 AGGGTTCTTCCATCTTCCAACTGCTTCCCAGCAAAGATAAGTCTCTGCTGATCCGGAGGG 12444 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 12445 ATACCTTCCTTATCCTG 12461 >seq14423 Length=23748 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | |||||||| | || || || || || || ||||| | Sbjct 11864 CCACCTCTCAATCGAAGCACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCT 11805 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || | |||||| |||||||||||||| || |||||||| ||||| Sbjct 11804 AGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAAAATCAACCTCTGCTGATCTGGAGGG 11745 Query 146171 ATTCCTTCTTTATCTTG 146187 || || |||||||| || Sbjct 11744 ATGCCCTCTTTATCCTG 11728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743113148026880