Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq38321 105 4e-18 seq43196 95.1 8e-15 seq42027 84.2 1e-11 seq40108 84.2 1e-11 seq32376 84.2 1e-11 >seq38321 Length=259108 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | ||| || ||||| ||||||||||| | Sbjct 81866 CCACCGCGGAGACGGAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCA 81925 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| |||||| || ||||| ||||| ||||||||||| || Sbjct 81926 AGTGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 81985 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | |||| || || || Sbjct 81986 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATTGTGTCGGATGACTCCACC 82045 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || || || || |||||||| |||||||||||| Sbjct 82046 TCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 82093 >seq43196 Length=72091 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| || ||| | || || | |||||| || ||||| Sbjct 33014 TCCTTCTGGATGTTGTAGTCGGCGAGGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAG 33073 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || ||||||||| ||| | | |||||| || |||||| ||| | | | Sbjct 33074 ATCAACCTCTGCTGGTCCGGGGGAATCCCCTCCTTATCCTGGATCTTTGCCTTAACGTTG 33133 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| ||||| || | |||||||| || |||||||| || ||||| Sbjct 33134 TCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACG 33193 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 33194 AAGATCTGCATC 33205 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTC 34236 || || ||||| | ||| || ||||| ||||||||||||| | || || || | || Sbjct 32765 AGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTG-CGACCATC 32823 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | ||||||||| ||||| || | || |||||| || ||| | | ||||||||| Sbjct 32824 CTCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTC 32883 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | | || | || | |||||| || | |||||||| Sbjct 32884 CTGGATCTTAGCCTTGACGTTGTCAATAGTGTCAGAGCTTTCGACCTCGAGGGTGATGGT 32943 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || ||||| ||||||||||| Sbjct 32944 CTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 32976 >seq42027 Length=16722 Score = 84.2 bits (92), Expect = 1e-11 Identities = 162/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | ||| || ||||| ||||||||||||| Sbjct 5706 CCACCGCGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCG 5647 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC---GAC- 34278 || ||| |||| || | ||||| || ||||| || | || ||||||||| | | Sbjct 5646 AGGGTGCGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCTGGTCC 5587 Query 34279 --GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGA 34335 || | | |||||||| ||| || ||||| | || | | || | |||| || Sbjct 5586 GGTGGGATTCCTTCCTTGTCTTGGATC-TTAGCTTTCACATTGTCGATTGTGTCGGAGGA 5528 Query 34336 TTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||| || || | ||||| || || || || || |||||||| |||||||||||| Sbjct 5527 TTCAACCTCAAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 5473 >seq40108 Length=192235 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | || || | || || ||||||||||| || || Sbjct 160281 TCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGACCATCCTCTAACTGCTTGCCAGCAAAG 160222 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || |||| ||||| || | ||| | || ||||| || ||||| |||| || Sbjct 160221 ATAAGCCTTTGCTGATCAGGTGGGATCCCT-TCCTTATCCTGGATCTTGGCTTTTACATT 160163 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | || || || | |||||||| |||||||| ||||||||||| Sbjct 160162 ATCAATGGTATCTGAACTCTCCACCTCTAAGGTGATGGTCTTGCCGGTCAGAGTTTTCAC 160103 Query 34378 AAAGATCTGCATC 34390 ||||||||||||| Sbjct 160102 AAAGATCTGCATC 160090 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || || | || || || || | ||| ||| || || || ||||| || Sbjct 161005 GAAGCCACCACGAAGTCGAAGGACAAGATGCAGAGTGGATTCCTTTTGAATATTGTAATC 160946 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | ||| ||| | || ||||||||||| || |||||||| || ||||||||||| Sbjct 160945 TGCCAGTGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATAAGTCGCTGCTGGTCTGG 160886 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATT 34337 ||| | | ||||||||| ||| |||||||| | || | |||| ||| | || Sbjct 160885 GGGAATACCCTCCTTGTCCTGGATC-TTTGCTTTCACATTATCAATCGTATCAGAGCTTT 160827 Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || || | || ||||| || || || | || || ||||| || ||||| Sbjct 160826 CCACCTCTAAGGTAATGGTCTTTCCTGTTAAGGTCTTGACAAAAATTTGCAT 160775 >seq32376 Length=6472 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/203 (71%), Gaps = 11/203 (5%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGC---TGACGGTCGTCGTCCAACTGCTTGCCTGC 34254 ||| || || ||||||||||||| || |||| | || || || |||||||| || Sbjct 804 TTCCTTTTGGATGTTGTAGTCGGCAAGGGTGTGAC---CATCCTCTAATTGCTTGCCAGC 860 Query 34255 GAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT- 34312 || ||||| | |||||| || | ||| | || |||||||| ||||| ||||| Sbjct 861 AAAGATGAGTCTCTGCTGATCTGGTGGGATCCCT-TCCTTGTCTTGGATCTTA-GCTTTC 918 Query 34313 AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTT 34372 | | | | || | ||| | || || |||| |||||||| || || || |||||| Sbjct 919 ACGTTGTCAATGGTATCCGAACTCTCCACCTCCAAGGTGATGGTCTTACCTGTTAGAGTT 978 Query 34373 TTCACAAAGATCTGCATC-GCTC 34394 |||||||||||||||||| |||| Sbjct 979 TTCACAAAGATCTGCATCTGCTC 1001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322896925667840