Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq36855 104 2e-17 seq32581 104 2e-17 seq40684 100 2e-16 >seq36855 Length=144149 Score = 104 bits (114), Expect = 2e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 20452 GAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAAT 20511 ||||| || |||||||||||||| ||||| ||||| ||||| ||||| || || || ||| Sbjct 115679 GAATTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTGCCATTTAAT 115738 Query 20512 ATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTT 20553 |||||| ||||||||| || || | |||||||| |||||| Sbjct 115739 ATTGCATCTTATGCGCTCCTGACATGCATGATTGCTCATGTT 115780 >seq32581 Length=13587 Score = 104 bits (114), Expect = 2e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 20452 GAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAAT 20511 ||||| || |||||||||||||| ||||| ||||| ||||| ||||| || || || ||| Sbjct 880 GAATTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTGCCATTTAAT 939 Query 20512 ATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTT 20553 |||||| ||||||||| || || | |||||||| |||||| Sbjct 940 ATTGCATCTTATGCGCTCCTGACATGCATGATTGCTCATGTT 981 >seq40684 Length=51770 Score = 100 bits (110), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || || || ||| || ||||| |||||||||||||| ||||| || |||||| Sbjct 20136 CAGTTCTATGTAGCAAATGGGGAGTTGTCATGTCAAATGTATCAGCGATCTGCGGATATG 20077 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||| || || || ||||||||| ||||||||| | || | |||||||| ||| Sbjct 20076 GGCCTGGGCGTGCCATTTAATATTGCATCTTATGCGCTCTTGACATGCATGATTGCTCAT 20017 Query 20551 GTT 20553 ||| Sbjct 20016 GTT 20014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398967680194480