Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq35886 100 6e-16 seq42083 91.5 3e-13 >seq35886 Length=22054 Score = 100 bits (110), Expect = 6e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| | | ||| ||| |||| || || || || |||| |||| ||||||||| | Sbjct 12297 TGGACAGTGAGATCATCTATGGCAGGGACTTTGACTATGATTATTTTGGTTTCAAAACCC 12238 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 | |||| ||| || ||| | || | | || ||| | |||||| | ||||||||||| Sbjct 12237 TTGAGAGATCCTACCTCTTGAAGGTACAAGGAAAGGTTGTGGAAAGGCCTCAGCACATGT 12178 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGA 248942 ||||| | || ||||| || |||||||||||||| || || Sbjct 12177 TGATGAGGGTTGCTGTTGGAATTCACAAGGATGATATTGA 12138 >seq42083 Length=66024 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| ||||| ||||| ||||| |||| || || || | || || Sbjct 45523 GACTTTGACTATGATTACTTTGGGTTCAAGACGCTTGAGAGGTCATACCTGTTGAAGGTT 45582 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || || | ||||| | |||||||||||||||| | || ||||| || |||||| Sbjct 45583 CAAGGGCAGGTTGTGGAGAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATTCAC 45642 Query 248929 AAGGATGACATAGAGAGCGTGC--TCGAGACGTA-CACCGGAATGAGTGAACGCTGGATG 248985 ||||||||||| || | | ||| | |||| || ||| | ||| | |||| ||| | Sbjct 45643 AAGGATGACATTGA-ATC-TGCTGTTAAGACTTATCACTTG-ATGTCTCAACGGTGGTTC 45699 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 || ||||| | ||||| || ||||| || || || Sbjct 45700 ACTCATGCATCCCCGACACTTTTCAATGCTGGAAC 45734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073154680650752