Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq42527 147 3e-30 seq36964 147 3e-30 seq32367 136 5e-27 seq1704 125 9e-24 seq35886 118 1e-21 seq37232 93.3 5e-14 seq37024 86.0 8e-12 >seq42527 Length=94160 Score = 147 bits (162), Expect = 3e-30 Identities = 404/619 (65%), Gaps = 0/619 (0%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||||||||| || |||||||| | ||| | ||||| |||| Sbjct 58002 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAA 57943 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 ||||||| || ||||| || || || || || ||||| || |||| ||| |||| Sbjct 57942 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATGGCGCAGAAGCTCCCGG 57883 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33753 | |||||||| ||||| || || || || | || | ||| | | | || || Sbjct 57882 AGAAGAAGATCCCTTCCACACAGGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGGTGG 57823 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | | ||||| || ||||| ||||| ||||| || || || || || ||||| | || Sbjct 57822 CGTCGATCCATTTCAACGCCCACTCGGCTTTCTTCTTGACGCAGGGGATGGTTTCCACGG 57763 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | ||||| | | ||||||| || || | || || || | || || || | Sbjct 57762 CGCGGAAGAGGTTGGATTTTTCAGCGGAGTCCTTGATGTAGGTTTCTAACAGGAGGCTGT 57703 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 |||| || || || ||||| || || || ||||| || | |||||| | ||||||| Sbjct 57702 ACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCTGTAGAAGGCGCGTGCCTCGG 57643 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 || ||||| | || | | | || | |||||| ||||| || || || Sbjct 57642 CGGATTGGACTTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACTATCCCGTCGGAGG 57583 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 34053 | || || || || | || || | || || | |||| | || || | || Sbjct 57582 CGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCGGTGAGGGAGTCCC 57523 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | | || ||| |||| ||| || || ||| | ||||| || ||||| || || | Sbjct 57522 AGTGGCGGAGATCGGACGATAGATCAACCTCCTCCGCCGTCCAGAACGATGCTTCGGCTT 57463 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173 | || ||||| | ||| || | | |||||||||||||| || |||| || ||| | Sbjct 57462 TCTTGTACATTTCCCAAATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGGT 57403 Query 34174 TTGGTGCAAGGATAGGTTC 34192 |||| ||||| | ||| || Sbjct 57402 TTGGAGCAAGAAGAGGCTC 57384 >seq36964 Length=242943 Score = 147 bits (162), Expect = 3e-30 Identities = 404/619 (65%), Gaps = 0/619 (0%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||||||||| || |||||||| | ||| | ||||| |||| Sbjct 59785 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAA 59726 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 ||||||| || ||||| || || || || || ||||| || |||| ||| |||| Sbjct 59725 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATGGCGCAGAAGCTCCCGG 59666 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33753 | |||||||| ||||| || || || || | || | ||| | | | || || Sbjct 59665 AGAAGAAGATCCCTTCCACACAGGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGGTGG 59606 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | | ||||| || ||||| ||||| ||||| || || || || || ||||| | || Sbjct 59605 CGTCGATCCATTTCAACGCCCACTCGGCTTTCTTCTTGACGCAGGGGATGGTTTCCACGG 59546 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | ||||| | | ||||||| || || | || || || | || || || | Sbjct 59545 CGCGGAAGAGGTTGGATTTTTCAGCGGAGTCCTTGATGTAGGTTTCTAACAGGAGGCTGT 59486 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 |||| || || || ||||| || || || ||||| || | |||||| | ||||||| Sbjct 59485 ACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCTGTAGAAGGCGCGTGCCTCGG 59426 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 || ||||| | || | | | || | |||||| ||||| || || || Sbjct 59425 CGGATTGGACTTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACTATCCCGTCGGAGG 59366 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 34053 | || || || || | || || | || || | |||| | || || | || Sbjct 59365 CGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCGGTGAGGGAGTCCC 59306 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | | || ||| |||| ||| || || ||| | ||||| || ||||| || || | Sbjct 59305 AGTGGCGGAGATCGGACGATAGATCAACCTCCTCCGCCGTCCAGAACGATGCTTCGGCTT 59246 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173 | || ||||| | ||| || | | |||||||||||||| || |||| || ||| | Sbjct 59245 TCTTGTACATTTCCCAAATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGGT 59186 Query 34174 TTGGTGCAAGGATAGGTTC 34192 |||| ||||| | ||| || Sbjct 59185 TTGGAGCAAGAAGAGGCTC 59167 >seq32367 Length=12065 Score = 136 bits (150), Expect = 5e-27 Identities = 241/349 (69%), Gaps = 3/349 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||||| ||| ||||| |||||||| || |||||||| | || | ||||| || | Sbjct 2391 ACATCAGACACGCGAAGTCGCAGTGGAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGA 2450 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || || || ||||| ||||| ||||| || ||||| || |||| ||| |||| Sbjct 2451 ATGTTAGCCCCGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGCGCAGAAGCTCCCGG 2510 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC-TCTCTCCATAACCGGCGCTG 33752 | |||||||||||||| || || || || | ||| | | | | | | | ||| Sbjct 2511 AGAAGAAGATTCCTTCCACACACGCGAACGCGACAAGCCGTTCCGCGAAGAAAGTATCTG 2570 Query 33753 TC--ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 || || ||||| || | ||||| ||||| ||||| |||| ||||| | ||||| | Sbjct 2571 TCGAGTGGATCCATTTCAGGGCCCACTCGGCTTTCTTCCTTACGCAAGGAACAGTTTCGA 2630 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | ||| ||||| | | || || || |||| || || || | | | || Sbjct 2631 TTGCACGGAAGAGTCTGCTCTTCTCCGCGGAGTCCTTAATGTAGGTTTCTAAGAGCAAAC 2690 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919 | ||||||||||| || ||||| |||||||| ||||| ||||||||||| Sbjct 2691 TGTACATTTCCGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAA 2739 >seq1704 Length=114806 Score = 125 bits (138), Expect = 9e-24 Identities = 407/624 (65%), Gaps = 10/624 (2%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||||||||| || |||||||| | || | ||||| || | Sbjct 97654 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGA 97595 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 ||||||| || ||||| || || || ||||| | ||| || || | ||| |||| Sbjct 97594 ACGTGAGCCCCGGCATGAGACCGCGTTTTTTCAACCAGAAGATCGCGCAGAAGCTCCCGG 97535 Query 33694 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCG---GCG 33749 | |||||||| ||||| || ||| || ||||||| | | | |||| | | || Sbjct 97534 AGAAGAAGATCCCTTCCAC-GCAGGCGAAGGCAACCA--CCCGCTCCGCGAAGGAATCCG 97478 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 || | | ||||| || ||||| ||||| ||||| || || || || ||||| Sbjct 97477 ATG-CGTCGATCCATTTCATCGCCCACTCGGCTTTCTTCGCGACGCAGGGGATGGTTTCG 97419 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 | ||| | ||||| || ||| || | || || | || || || | || || Sbjct 97418 ACGGCGTGGAAGAGGCGGTGTTTCTCGGTGGAGTCCTTGATGTAGGTTTCTAACAGGAGG 97359 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 || ||||| || || || ||||| || ||||| ||||| || |||||||| | || Sbjct 97358 CTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGTGCT 97299 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 |||| || || |||||| | || | | | || | |||||| || || || || Sbjct 97298 TCGGCGATTTGGACTTCTTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCGTCG 97239 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTT 34048 ||| || || || || | || || | || || | |||| | | || | || Sbjct 97238 GAGGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCGT-TGAGGGA 97180 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 | ||| || || || | || | || |||||||| | ||||| || || || Sbjct 97179 GTCCCAGTCGCGGAGGTCGTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAGGAGGCGAG 97120 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 34168 || || || ||||| | |||||| || | |||||||||||||| || || | | Sbjct 97119 GGCTTTCTTGTACATTTGCCAGATTTCGGGGTATTGGATTGGGAACATGCAGAAGCGGTC 97060 Query 34169 TGGATTTGGTGCAAGGATAGGTTC 34192 ||| || |||||||||| ||| || Sbjct 97059 TGGGTTGGGTGCAAGGAGAGGCTC 97036 >seq35886 Length=22054 Score = 118 bits (130), Expect = 1e-21 Identities = 149/200 (75%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | || |||||||| || || |||||| ||||||| | | || | Sbjct 12060 GTTCCTGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTCAGACAACAAATGG 12119 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | | ||| || || ||||| | ||| |||||||| || || || | ||| || Sbjct 12120 TAGGTTTTGACAGCCGATTCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 12178 Query 63782 CATGTGCTGAGGTCTTTCAACAA--TTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 |||||||||||| ||||| |||| ||| ||| || ||||| | ||||||| | || Sbjct 12179 CATGTGCTGAGGCCTTTCCACAACCTTTCCTTG--TACCTTCAAGAGGTAGGATCTCTCA 12236 Query 63840 AAAGTTTTAAAACCAAAATA 63859 | ||||| ||||||||||| Sbjct 12237 AGGGTTTTGAAACCAAAATA 12256 >seq37232 Length=10575 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| |||||| || ||||| ||||| || |||||||| | ||| || ||||| |||| Sbjct 7166 ACAACAAACAAGCAAAATCACAGTGAAGCCCCTCGTCACGTGAAATCAACTCGTTGGAAA 7107 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 ||||||| || ||||| || || || || || ||||| || || | | ||| |||| Sbjct 7106 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATCGCACAGAAGCTCCCGG 7047 Query 33694 AAAAGAAGATTCCTTCTAC 33712 | |||||||| ||||| || Sbjct 7046 AGAAGAAGATCCCTTCCAC 7028 >seq37024 Length=156878 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||||||||| || |||||||| | || | ||||| || | Sbjct 305 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGA 246 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 ||||||| || ||||| || || || ||||| | ||| || || | ||| |||| Sbjct 245 ACGTGAGCCCCGGCATGAGACCGCGTTTTTTCAACCAGAAGATCGCGCAGAAGCTCCCGG 186 Query 33694 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAA 33726 | |||||||| ||||| || ||| || ||||||| Sbjct 185 AGAAGAAGATCCCTTCCAC-GCAGGCGAAGGCAA 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629467547377920