Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq32367 136 5e-27 seq35886 116 5e-21 seq42527 111 2e-19 seq36964 111 2e-19 seq42083 95.1 2e-14 seq1704 91.5 2e-13 seq37232 87.8 2e-12 seq37024 86.0 8e-12 >seq32367 Length=12065 Score = 136 bits (150), Expect = 5e-27 Identities = 243/350 (69%), Gaps = 5/350 (1%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||||| ||| ||||| |||||||| || |||||||| | || | |||||||| | Sbjct 2391 ACATCAGACACGCGAAGTCGCAGTGGAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGA 2450 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 36269 | || || || ||||| ||||| ||||| || ||||| || |||| |||| | | ||| | Sbjct 2451 ATGTTAGCCCCGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGG-CGCAGAAGCTCCCG 2509 Query 36270 AA-AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA-CT 36327 | ||||| |||||||| || ||| || || | ||| | || | | | | || Sbjct 2510 GAGAAGAAGATTCCTTCCACACACGCGAACGCGACAAGCCGTTCCGCGAAGAAAGTATCT 2569 Query 36328 GTCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 ||| || ||||| || | ||||| ||||| ||||| |||| ||||| | || || Sbjct 2570 GTCGAGTGGATCCATTTCAGGGCCCACTCGGCTTTCTTCCTTACGCAAGGAACAGTTTCG 2629 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 || ||| ||||| | | || || || |||| || || || | | | | Sbjct 2630 ATTGCACGGAAGAGTCTGCTCTTCTCCGCGGAGTCCTTAATGTAGGTTTCTAAGAGCAAA 2689 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 || ||||||||||| || ||||| |||||||| || || ||||||||||| Sbjct 2690 CTGTACATTTCCGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAA 2739 >seq35886 Length=22054 Score = 116 bits (128), Expect = 5e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| ||||| || | || |||||||| || || |||||| ||||||| | | || | Sbjct 12060 GTTCCTGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTCAGACAACAAATGG 12119 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || | | ||| || || ||||| | ||| |||||||| || || || | ||| || Sbjct 12120 TAGGTTTTGACAGCCGATTCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 12178 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| ||||| || | ||| | || ||||| | ||||||| | || | Sbjct 12179 CATGTGCTGAGGCCTTTCCACAACCTTTCCTTGTACCTTCAAGAGGTAGGATCTCTCAAG 12238 Query 66635 AGTTTTAAAACCAAAATA 66652 ||||| ||||||||||| Sbjct 12239 GGTTTTGAAACCAAAATA 12256 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 66237 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCG 66296 || || ||||| | || | |||||| || | || ||||||||||| ||||| ||||| Sbjct 11720 GCAGTATTATTGAACACGCGCAACATGGGGACGATTCCATTGGATGTCCCATTAGTCCCA 11779 Query 66297 GAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 66356 || || ||||| |||||||||| || || || | ||| ||||| || || | Sbjct 11780 CCAATGTAACTTCCTGTTGCACGAATGTTGTGAACAGAGACACCAATTCCTCCAGCTGAT 11839 Query 66357 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 66416 ||| ||| | || || || || || ||||| || ||||||||||||||||| | Sbjct 11840 TTACTGATGACAGCACACTCCTTCAAAGTCTCATATATACCCTCTATACTATCATCTTGC 11899 Query 66417 ATGTTAAGTAGAAAACAGCTA 66437 ||| | |||||| || ||| Sbjct 11900 ATGCACACTAGAAAGCAACTA 11920 >seq42527 Length=94160 Score = 111 bits (122), Expect = 2e-19 Identities = 379/586 (65%), Gaps = 6/586 (1%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||| || |||||||||||||| || |||||||| | ||| | |||||||||| Sbjct 58002 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAA 57943 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 ||||||| || ||||| || || || || || ||||| || |||| |||| | | | || Sbjct 57942 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATGG-CGCAGAAGCTCCCG 57884 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || ||||| || ||||| || || || || | || | ||| | | | | || Sbjct 57883 GAGAAGAAGATCCCTTCCACACAGGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGGTG 57824 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 | | ||||| || ||||| ||||| ||||| || || || || || || || | Sbjct 57823 GCGTCGATCCATTTCAACGCCCACTCGGCTTTCTTCTTGACGCAGGGGATGGTTTCCACG 57764 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 || ||||| | | ||||||| || || | || || || | || || || Sbjct 57763 GCGCGGAAGAGGTTGGATTTTTCAGCGGAGTCCTTGATGTAGGTTTCTAACAGGAGGCTG 57704 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 ||||| || || || ||||| || || || || || || | |||||| | |||||| Sbjct 57703 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCTGTAGAAGGCGCGTGCCTCG 57644 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 | || ||||| | || | | | || | |||||| ||||| ||||| | Sbjct 57643 GCGGATTGGACTTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACTATCCCGTCGGAG 57584 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG--TTTGGTGTTAGTTTAT 36626 || || || || || | || || | || || | |||| | |||| || | Sbjct 57583 GCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCGGTG--AGGGAGT 57526 Query 36627 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 36686 ||| | || ||| |||| ||| || || ||| | ||||| || ||||| || | Sbjct 57525 CCCAGTGGCGGAGATCGGACGATAGATCAACCTCCTCCGCCGTCCAGAACGATGCTTCGG 57466 Query 36687 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 | || || ||||| | ||| || | | ||||| ||||| || || Sbjct 57465 CTTTCTTGTACATTTCCCAAATCTGTGGGTATTGGATTGGGAACAT 57420 >seq36964 Length=242943 Score = 111 bits (122), Expect = 2e-19 Identities = 379/586 (65%), Gaps = 6/586 (1%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||| || |||||||||||||| || |||||||| | ||| | |||||||||| Sbjct 59785 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAA 59726 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 ||||||| || ||||| || || || || || ||||| || |||| |||| | | | || Sbjct 59725 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATGG-CGCAGAAGCTCCCG 59667 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || ||||| || ||||| || || || || | || | ||| | | | | || Sbjct 59666 GAGAAGAAGATCCCTTCCACACAGGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGGTG 59607 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 | | ||||| || ||||| ||||| ||||| || || || || || || || | Sbjct 59606 GCGTCGATCCATTTCAACGCCCACTCGGCTTTCTTCTTGACGCAGGGGATGGTTTCCACG 59547 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 || ||||| | | ||||||| || || | || || || | || || || Sbjct 59546 GCGCGGAAGAGGTTGGATTTTTCAGCGGAGTCCTTGATGTAGGTTTCTAACAGGAGGCTG 59487 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 ||||| || || || ||||| || || || || || || | |||||| | |||||| Sbjct 59486 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCTGTAGAAGGCGCGTGCCTCG 59427 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 | || ||||| | || | | | || | |||||| ||||| ||||| | Sbjct 59426 GCGGATTGGACTTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACTATCCCGTCGGAG 59367 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG--TTTGGTGTTAGTTTAT 36626 || || || || || | || || | || || | |||| | |||| || | Sbjct 59366 GCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCGGTG--AGGGAGT 59309 Query 36627 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 36686 ||| | || ||| |||| ||| || || ||| | ||||| || ||||| || | Sbjct 59308 CCCAGTGGCGGAGATCGGACGATAGATCAACCTCCTCCGCCGTCCAGAACGATGCTTCGG 59249 Query 36687 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 | || || ||||| | ||| || | | ||||| ||||| || || Sbjct 59248 CTTTCTTGTACATTTCCCAAATCTGTGGGTATTGGATTGGGAACAT 59203 >seq42083 Length=66024 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | ||| || | ||| | || | || ||| |||| || ||| Sbjct 46253 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAACACGCGCAGCATGGGAACAACACC 46194 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 |||||| || ||||| || ||| || || || || | |||||||| || || || Sbjct 46193 ATTGGAAGTCCCATTAGTTCCGCGAATGTAACTGCCCATGGCACGAATGTTGTGAACAGA 46134 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| |||||| ||| || | || || || || |||||||| || Sbjct 46133 AACACCAATTCCTCCTGCCGATTTGCTAATGACAGCACACTCCTTCAAAGTATCATAAAT 46074 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 ||||||||||||||||| ||||| Sbjct 46073 CCCCTCTATACTATCATCTTTCATG 46049 >seq1704 Length=114806 Score = 91.5 bits (100), Expect = 2e-13 Identities = 249/377 (66%), Gaps = 6/377 (2%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||| || |||||||||||||| || |||||||| | || | |||||||| | Sbjct 97654 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGA 97595 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 ||||||| || ||||| || || || ||||| | ||| || || | |||| | | | || Sbjct 97594 ACGTGAGCCCCGGCATGAGACCGCGTTTTTTCAACCAGAAGATCG-CGCAGAAGCTCCCG 97536 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || ||||| || ||||| || || ||||||| | | | |||| | | | | Sbjct 97535 GAGAAGAAGATCCCTTCCACGCAGGCGAAGGCAACCA--CCCGCTCCGCGAAGGAATCCG 97478 Query 36329 --TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 | | ||||| || ||||| ||||| ||||| || || || || || || | Sbjct 97477 ATGCGTCGATCCATTTCATCGCCCACTCGGCTTTCTTCGCGACGCAGGGGATGGTTTCGA 97418 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 || | ||||| || ||| || | || || | || || || | || || | Sbjct 97417 CGGCGTGGAAGAGGCGGTGTTTCTCGGTGGAGTCCTTGATGTAGGTTTCTAACAGGAGGC 97358 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506 | ||||| || || || ||||| || ||||| || || || |||||||| | || | Sbjct 97357 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGTGCTT 97298 Query 36507 CGGTAATCTGTACTTCT 36523 ||| || || |||||| Sbjct 97297 CGGCGATTTGGACTTCT 97281 >seq37232 Length=10575 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| |||||| || ||||| ||||| || |||||||| | ||| || |||||||||| Sbjct 7166 ACAACAAACAAGCAAAATCACAGTGAAGCCCCTCGTCACGTGAAATCAACTCGTTGGAAA 7107 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 ||||||| || ||||| || || || || || ||||| || || | | || | | | || Sbjct 7106 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATCG-CACAGAAGCTCCCG 7048 Query 36269 GAAAAGAAAATTCCTTCTAC 36288 || ||||| || ||||| || Sbjct 7047 GAGAAGAAGATCCCTTCCAC 7028 >seq37024 Length=156878 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||| || |||||||||||||| || |||||||| | || | |||||||| | Sbjct 305 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGA 246 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 ||||||| || ||||| || || || ||||| | ||| || || | |||| | | | || Sbjct 245 ACGTGAGCCCCGGCATGAGACCGCGTTTTTTCAACCAGAAGATCG-CGCAGAAGCTCCCG 187 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 36302 || ||||| || ||||| || || ||||||| Sbjct 186 GAGAAGAAGATCCCTTCCACGCAGGCGAAGGCAA 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657806987557760