Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq37232 105 5e-18 seq42527 95.1 9e-15 seq36964 95.1 9e-15 seq32367 87.8 1e-12 >seq37232 Length=10575 Score = 105 bits (116), Expect = 5e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 22795 GCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTG 22854 || || ||||||||||||||||| |||||||| ||| | ||||||||||||||||| Sbjct 7061 GCGATTTTCTGGCTGAAGAAACGCGGTCTCATGCCGGGGCTCACGTTTTCCAACGAGTTG 7120 Query 22855 ATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGT 22900 ||| |||||||| || || |||||||| ||||||||| || ||| Sbjct 7121 ATTTCACGTGACGAGGGGCTTCACTGTGATTTTGCTTGTTTGTTGT 7166 >seq42527 Length=94160 Score = 95.1 bits (104), Expect = 9e-15 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATT-TGCGGCCAT 22799 |||||| | || || || ||| ||||| || | || || ||| || |||| |||| Sbjct 57843 CGTCTCGTCGCTTTCGCCTGTGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCG-CCAT 57901 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 ||||||||||||||||| |||||||| ||| | |||||||||||||| ||||| Sbjct 57902 TTTCTGGCTGAAGAAACGCGGTCTCATGCCGGGGCTCACGTTTTCCAACGAGCTGATTTC 57961 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGT 22900 |||||||| || || ||||| || || || || || ||| Sbjct 57962 ACGTGACGAGGGGCTTCACTGCGATTTCGCGTGCTTGTTGT 58002 >seq36964 Length=242943 Score = 95.1 bits (104), Expect = 9e-15 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATT-TGCGGCCAT 22799 |||||| | || || || ||| ||||| || | || || ||| || |||| |||| Sbjct 59626 CGTCTCGTCGCTTTCGCCTGTGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCG-CCAT 59684 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 ||||||||||||||||| |||||||| ||| | |||||||||||||| ||||| Sbjct 59685 TTTCTGGCTGAAGAAACGCGGTCTCATGCCGGGGCTCACGTTTTCCAACGAGCTGATTTC 59744 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGT 22900 |||||||| || || ||||| || || || || || ||| Sbjct 59745 ACGTGACGAGGGGCTTCACTGCGATTTCGCGTGCTTGTTGT 59785 >seq32367 Length=12065 Score = 87.8 bits (96), Expect = 1e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATT-TGCGGCCATATTCTGGCT 22808 || || ||| ||| ||||| || | || || ||| || |||| |||| |||||||| Sbjct 2541 GCGTTCGCGTGTGTGGAAGGAATCTTCTTCTCCGGGAGCTTCTGCG-CCATCTTCTGGCT 2483 Query 22809 GAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868 |||||| || |||||||| ||| | | || ||||||||| |||| ||||||||| Sbjct 2482 GAAGAAGCGCGGCCTCATGCCGGGGCTAACATTCTCCAACGAGCTGATCTCCCGTGACGA 2423 Query 22869 AGGTCTACACTGTGACTTTGCTTGTATGCTGT 22900 || || ||||| ||||| || ||| || ||| Sbjct 2422 GGGGCTCCACTGCGACTTCGCGTGTCTGATGT 2391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356040555230992