Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq39663 107 2e-18 seq41040 104 2e-17 seq14423 95.1 1e-14 seq40108 91.5 1e-13 seq14855 89.7 5e-13 seq32376 82.4 8e-11 >seq39663 Length=443811 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||||| || |||| ||| || |||| || ||||| || || ||||| |||||| Sbjct 345258 CCGCCTCTCAATCGCAGAACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCG 345317 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || ||||| |||||||||||| | ||||| | ||||||||| || || Sbjct 345318 AGGGTCCTTCCATCCTCGAGTTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGG 345377 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| |||||||| ||| || || | | || | ||||| | || |||||| Sbjct 345378 ATGCCCTCTTTGTCCTGGATCTTCGCCTTCACATTATCAATGGTGTCTGAGGATTCCACC 345437 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || ||||| || || || || || ||||| Sbjct 345438 TCGAGGGTGATTGTTTTACCCGTCAATGTCTTGACAAAGATCTGCAT 345484 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| ||| ||||| | |||||||| || || ||||||||||| Sbjct 345030 CCACCACGAAGACGCAGAACCAAGTGTAGGGTAGACTCCTTCTGGATGTTATAATCAGCA 345089 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| ||||| || |||||| |||| || | ||||| || ||||| Sbjct 345090 AGGGTTCTTCCATCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 345149 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | || | | || | || || | |||||| Sbjct 345150 ATGCCCTCCTTGTC-CTGAATCTTCGCCTTCACATTATCAATGGTATCAGAACTCTCCAC 345208 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | ||||| || ||||| || || || || || |||||| Sbjct 345209 CTCCAAAGTGATGGTCTTCCCTGTCAAGGTCTTAACAAAAATCTGCATA 345257 >seq41040 Length=490441 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || |||||||| ||||||| || ||| | Sbjct 167755 CCACCACGGAGACGGAGCACCAAGTGTAGGGTGGACTCTTTCCGAATGTTGTAGTCGGCC 167814 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| ||||||||||||||| |||| || | || || || || || Sbjct 167815 AAGGTTCTGCCATCTTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGG 167874 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| ||| |||| | || | | || | |||||| | | |||||| Sbjct 167875 ATGCCCTCTTTGTC-TTGAATTTTGGCCTTCACATTGTCAATTGTGTCAGAGCTCTCCAC 167933 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| ||| | ||||| || || | || || || || ||||||||| Sbjct 167934 CTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAAATTTGCATA 167982 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || | ||| | || |||||||| |||||||| ||||| || ||| || Sbjct 179214 CGCAACACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCAGCCAATGTTCTGTCA 179273 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || |||||||| ||||| | || || | ||||| || ||||| ||||| |||||| Sbjct 179274 TCCTCAAGCTGTTTGCCAGCGAATATGAGCCTCTGCTGGTCTGGAGGGATGCCCTCTTTG 179333 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | || || |||| | | ||||||||||| ||| | Sbjct 179334 TCC-TGAATCTTGGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTGAT 179392 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || ||||| || || || || || ||||| Sbjct 179393 GGTCTTTCCAGTCAATGTCTTCACAAAGATCTGCAT 179428 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || |||||||| |||||||| || ||| | Sbjct 178974 CCACCACGGAGACGGAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCC 179033 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| ||||||||||||||| |||| || | || || || || || Sbjct 179034 AAGGTTCTGCCATCTTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGG 179093 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| ||| |||| | || | | || | |||||| | | ||| || Sbjct 179094 ATGCCCTCTTTGTC-TTGAATTTTGGCCTTCACATTGTCAATTGTGTCTGAGCTCTCTAC 179152 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | |||||||| || | || || || || || |||||| Sbjct 179153 CTCCAAAGTAATTGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCATA 179201 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||| | || | ||| | || |||||||| |||||||| ||||| || || || Sbjct 167081 AAACGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCAGCCAAAGTTCTG 167140 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 || || |||||||| |||||| |||| || | || || || || || ||||||||| Sbjct 167141 CCATCCTCAAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGAATGCCTTCT 167200 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| |||| | || | | || | ||||| | ||||||||||| ||| Sbjct 167201 TTGTC-TTGAATTTTAGCCTTCACATTGTCGATGGTGTCAGAACTCTCCACCTCAAGGGT 167259 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | ||||| || || | || || || || ||||||||| Sbjct 167260 GATTGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCATA 167299 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||| | || | ||| | || |||||||| |||||||| ||||| || || || Sbjct 178299 AAACGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCAGCCAAAGTTCTG 178358 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 || || |||||||| |||||| |||| || | || || || || || ||||||||| Sbjct 178359 CCATCCTCAAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGAATGCCTTCT 178418 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| |||| | || | | || | ||||| | ||||||||||| ||| Sbjct 178419 TTGTC-TTGAATTTTAGCCTTCACGTTGTCGATGGTGTCAGAACTCTCCACCTCAAGGGT 178477 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | ||||| || || | || || || || ||||||||| Sbjct 178478 GATGGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCATA 178517 >seq14423 Length=23748 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| |||||||| ||||||||||| ||||| | |||| || || Sbjct 11619 AACAAGGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGCAAGGGTGCGACCATCCTC 11560 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | || ||||||||| |||| || | ||||||||| || || || ||||| ||||| Sbjct 11559 CAATTGCTTACCAGCAAAGATAAGCCTTTGCTGATCAGGTGGGATCCCTTCCTTGTCTTG 11500 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 |||||| ||| | | || | || || | |||||||||| ||| | ||||| Sbjct 11499 GATTTTCGCTTTAACATTGTCAATGGTATCTGAACTTTCCACCTCAAGGGTAATGGTCTT 11440 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | ||||| || || || ||||| Sbjct 11439 GCCGGTGAGAGTTTTCACAAAAATCTGCAT 11410 >seq40108 Length=192235 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || || || | |||||||| || |||||||||||||| Sbjct 160774 GCCTCCACGAAGCCGCAACACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGC 160715 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||||| |||||||| |||||| |||| || | ||||| || || || Sbjct 160714 AAGGGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGCGG 160655 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | || | ||| | | || | || || | | |||| Sbjct 160654 GATGCCCTCCTTGTC-CTGAATCTTGGCTTTCACATTATCAATAGTATCTGAGCTTTCCA 160596 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| || ||||| || || || || |||||||| Sbjct 160595 CCTCCAACGTTATTGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 160547 >seq14855 Length=14869 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||| ||||| | |||||||| || || ||||||||||| | || || Sbjct 12337 CGCAAAACCAAGTGCAGTGTAGACTCCTTCTGGATGTTATAATCTGAAAGGGTTCTTCCA 12396 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||| || |||||| |||| || | |||||||| ||||| || ||||| || Sbjct 12397 TCTTCCAACTGCTTCCCAGCAAAGATAAGTCTCTGCTGATCCGGAGGGATACCTTCCTTA 12456 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | || | ||| || | ||| ||||| | || | Sbjct 12457 TC-CTGAATCTTAGCTTTCACATTGTCAATTGTATCAGAACTCTCAACCTCCAGAGTTAT 12515 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || ||||| || || || || |||||||| Sbjct 12516 GGTCTTCCCCGTCAATGTCTTCACAAAAATTTGCAT 12551 >seq32376 Length=6472 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || || || | |||||||| || |||||||||||||| Sbjct 84 GCCACCACGAAGCCGCAAGACCAAATGCAAAGTAGACTCCTTCTGAATGTTATAATCAGC 143 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||||| ||||| || || ||| |||| || | |||||||| || || Sbjct 144 AAGAGTTCTACCATCTTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGCGG 203 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||| || || || ||| | |||| ||| | | || | || || | |||| Sbjct 204 GATGCCCTCCTTATC-CTGAATCTTTGCTTTCACATTATCAATAGTATCTGAACTTTCCA 262 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| || ||||| || || || || |||||||| Sbjct 263 CCTCCAAAGTAATTGTCTTTCCTGTCAAGGTCTTGACAAAAATTTGCAT 311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495788287628800