Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq42527 176 6e-39 seq36964 176 6e-39 seq32367 154 2e-32 seq1704 145 1e-29 seq35886 120 4e-22 seq37024 102 1e-16 seq37232 87.8 3e-12 >seq42527 Length=94160 Score = 176 bits (194), Expect = 6e-39 Identities = 407/611 (67%), Gaps = 2/611 (0%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || |||||||||||||| || |||||||| | ||| || |||||||||| Sbjct 58002 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAA 57943 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 ||||||| || ||||| || || || || || ||||| || |||| |||| || ||| Sbjct 57942 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATGG-CGCAGAAGCTCCCG 57884 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || |||||||| ||||| || ||| || || || || | ||| | | | || || Sbjct 57883 GAGAAGAAGATCCCTTCCACACAGGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGGTG 57824 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | | ||||| || ||||| ||||| ||||| || || || || || ||||| | | Sbjct 57823 GCGTCGATCCATTTCAACGCCCACTCGGCTTTCTTCTTGACGCAGGGGATGGTTTCCACG 57764 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || ||||| | | ||||||| || || | || || || | || || || Sbjct 57763 GCGCGGAAGAGGTTGGATTTTTCAGCGGAGTCCTTGATGTAGGTTTCTAACAGGAGGCTG 57704 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| || || || ||||| || || || ||||| || | |||||| | |||||| Sbjct 57703 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCTGTAGAAGGCGCGTGCCTCG 57644 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | || ||||| | || | | | || | |||||| ||||| ||||| | Sbjct 57643 GCGGATTGGACTTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACTATCCCGTCGGAG 57584 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 || || || || || | || || | || || || |||| | || || | | Sbjct 57583 GCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCGGTGAGGGAGTCC 57524 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || | || ||| |||| ||| || || ||| | ||||| || ||||| || || Sbjct 57523 CAGTGGCGGAGATCGGACGATAGATCAACCTCCTCCGCCGTCCAGAACGATGCTTCGGCT 57464 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 || || ||||| | ||| || | | |||||||||||||| || |||| || ||| Sbjct 57463 TTCTTGTACATTTCCCAAATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGG 57404 Query 50551 TTTGGTGCAAG 50561 ||||| ||||| Sbjct 57403 TTTGGAGCAAG 57393 >seq36964 Length=242943 Score = 176 bits (194), Expect = 6e-39 Identities = 407/611 (67%), Gaps = 2/611 (0%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || |||||||||||||| || |||||||| | ||| || |||||||||| Sbjct 59785 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAA 59726 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 ||||||| || ||||| || || || || || ||||| || |||| |||| || ||| Sbjct 59725 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATGG-CGCAGAAGCTCCCG 59667 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || |||||||| ||||| || ||| || || || || | ||| | | | || || Sbjct 59666 GAGAAGAAGATCCCTTCCACACAGGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGGTG 59607 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | | ||||| || ||||| ||||| ||||| || || || || || ||||| | | Sbjct 59606 GCGTCGATCCATTTCAACGCCCACTCGGCTTTCTTCTTGACGCAGGGGATGGTTTCCACG 59547 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || ||||| | | ||||||| || || | || || || | || || || Sbjct 59546 GCGCGGAAGAGGTTGGATTTTTCAGCGGAGTCCTTGATGTAGGTTTCTAACAGGAGGCTG 59487 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| || || || ||||| || || || ||||| || | |||||| | |||||| Sbjct 59486 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCTGTAGAAGGCGCGTGCCTCG 59427 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | || ||||| | || | | | || | |||||| ||||| ||||| | Sbjct 59426 GCGGATTGGACTTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACTATCCCGTCGGAG 59367 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 || || || || || | || || | || || || |||| | || || | | Sbjct 59366 GCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCGGTGAGGGAGTCC 59307 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || | || ||| |||| ||| || || ||| | ||||| || ||||| || || Sbjct 59306 CAGTGGCGGAGATCGGACGATAGATCAACCTCCTCCGCCGTCCAGAACGATGCTTCGGCT 59247 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 || || ||||| | ||| || | | |||||||||||||| || |||| || ||| Sbjct 59246 TTCTTGTACATTTCCCAAATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGG 59187 Query 50551 TTTGGTGCAAG 50561 ||||| ||||| Sbjct 59186 TTTGGAGCAAG 59176 >seq32367 Length=12065 Score = 154 bits (170), Expect = 2e-32 Identities = 247/350 (71%), Gaps = 5/350 (1%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||||| ||| ||||| |||||||| || |||||||| | || || |||||||| | Sbjct 2391 ACATCAGACACGCGAAGTCGCAGTGGAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGA 2450 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA-CCCA 50070 | || || || ||||| ||||| ||||| || ||||| || |||| |||| | | ||| Sbjct 2451 ATGTTAGCCCCGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGG-CGCAGAAGCTCCCG 2509 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTC-TCTCTCCATAACTGGCGCT 50129 || |||||||||||||| || || || || ||||| | | | | | | | || Sbjct 2510 GAGAAGAAGATTCCTTCCACACACGCGAACGCGACAAGCCGTTCCGCGAAGAAAGTATCT 2569 Query 50130 GTC--ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 ||| || ||||| || | ||||| ||||| ||||| |||| ||||| | ||||| Sbjct 2570 GTCGAGTGGATCCATTTCAGGGCCCACTCGGCTTTCTTCCTTACGCAAGGAACAGTTTCG 2629 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || ||| ||||| | | || || || |||| || || || | | | | Sbjct 2630 ATTGCACGGAAGAGTCTGCTCTTCTCCGCGGAGTCCTTAATGTAGGTTTCTAAGAGCAAA 2689 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 50297 || ||||||||||| || ||||| |||||||| ||||| ||||||||||| Sbjct 2690 CTGTACATTTCCGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAA 2739 >seq1704 Length=114806 Score = 145 bits (160), Expect = 1e-29 Identities = 405/615 (66%), Gaps = 6/615 (1%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || |||||||||||||| || |||||||| | || || |||||||| | Sbjct 97654 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGA 97595 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 ||||||| || ||||| || || || ||||| | ||| || || | |||| || ||| Sbjct 97594 ACGTGAGCCCCGGCATGAGACCGCGTTTTTTCAACCAGAAGATCG-CGCAGAAGCTCCCG 97536 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACTGGCGC 50128 || |||||||| ||||| || ||| |||||||| | | ||| | | | | || Sbjct 97535 GAGAAGAAGATCCCTTCCACGCAGGCGAAGGCAACCACCCGCTCCGCGAAGGAAT-CCGA 97477 Query 50129 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 || | | ||||| || ||||| ||||| ||||| || || || || ||||| | Sbjct 97476 TG-CGTCGATCCATTTCATCGCCCACTCGGCTTTCTTCGCGACGCAGGGGATGGTTTCGA 97418 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 ||| | ||||| || ||| || | || || | || || || | || || | Sbjct 97417 CGGCGTGGAAGAGGCGGTGTTTCTCGGTGGAGTCCTTGATGTAGGTTTCTAACAGGAGGC 97358 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 | ||||| || || || ||||| || ||||| ||||| || |||||||| | || | Sbjct 97357 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGTGCTT 97298 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 ||| || || |||||| | || | | | || | |||||| || || ||||| Sbjct 97297 CGGCGATTTGGACTTCTTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCGTCGG 97238 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT 50428 ||| || || || || | || || | || || || |||| | | || | Sbjct 97237 AGGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCGTTGAGGGAGT 97178 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||| || || || | || | || |||||||| | ||||| || || || | Sbjct 97177 CCCAGTCGCGGAGGTCGTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAGGAGGCGAGGG 97118 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTG 50548 | || || ||||| | |||||| || | |||||||||||||| || || | | || Sbjct 97117 CTTTCTTGTACATTTGCCAGATTTCGGGGTATTGGATTGGGAACATGCAGAAGCGGTCTG 97058 Query 50549 GATTTGGTGCAAGGA 50563 | || |||||||||| Sbjct 97057 GGTTGGGTGCAAGGA 97043 >seq35886 Length=22054 Score = 120 bits (132), Expect = 4e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | || |||||||| || || |||||| ||||||||| | || | Sbjct 12060 GTTCCTGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTCAGACAACAAATGG 12119 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | | ||| ||||| ||||| | ||| |||||||| || || || | ||| || Sbjct 12120 TAGGTTTTGACAGCCGATTCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 12178 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| ||||| || | ||| | || ||||| | ||| ||| | || | Sbjct 12179 CATGTGCTGAGGCCTTTCCACAACCTTTCCTTGTACCTTCAAGAGGTAGGATCTCTCAAG 12238 Query 80514 AGTTTTAAAACCAAAATA 80531 ||||| ||||||||||| Sbjct 12239 GGTTTTGAAACCAAAATA 12256 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 80116 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCG 80175 || || ||||| | || | |||||| || | || ||||||||||| ||||| ||||| Sbjct 11720 GCAGTATTATTGAACACGCGCAACATGGGGACGATTCCATTGGATGTCCCATTAGTCCCA 11779 Query 80176 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 80235 || || ||||| | |||||||| || || || | ||| ||||| || || | Sbjct 11780 CCAATGTAACTTCCTGTTGCACGAATGTTGTGAACAGAGACACCAATTCCTCCAGCTGAT 11839 Query 80236 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATC 80295 ||| ||| | || || || || || ||||| || |||||||| |||||||| | Sbjct 11840 TTACTGATGACAGCACACTCCTTCAAAGTCTCATATATACCCTCTATACTATCATCTTGC 11899 Query 80296 ATGTTAAGTAGAAAACAGCTA 80316 ||| | |||||| || ||| Sbjct 11900 ATGCACACTAGAAAGCAACTA 11920 >seq37024 Length=156878 Score = 102 bits (112), Expect = 1e-16 Identities = 117/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || |||||||||||||| || |||||||| | || || |||||||| | Sbjct 305 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGA 246 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 ||||||| || ||||| || || || ||||| | ||| || || | |||| || ||| Sbjct 245 ACGTGAGCCCCGGCATGAGACCGCGTTTTTTCAACCAGAAGATCG-CGCAGAAGCTCCCG 187 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAAC 50105 || |||||||| ||||| || ||| |||||||| Sbjct 186 GAGAAGAAGATCCCTTCCACGCAGGCGAAGGCAAC 152 >seq37232 Length=10575 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| |||||| || ||||| ||||| || |||||||| | ||| | |||||||||| Sbjct 7166 ACAACAAACAAGCAAAATCACAGTGAAGCCCCTCGTCACGTGAAATCAACTCGTTGGAAA 7107 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 ||||||| || ||||| || || || || || ||||| || || | | || || ||| Sbjct 7106 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATCG-CACAGAAGCTCCCG 7048 Query 50071 GAAAAGAAGATTCCTTCTAC 50090 || |||||||| ||||| || Sbjct 7047 GAGAAGAAGATCCCTTCCAC 7028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717869586200960