Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq14423 107 1e-18 seq40108 91.5 1e-13 seq41040 84.2 2e-11 >seq14423 Length=23748 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||| | ||| ||||| | || |||||||| ||||| |||||| Sbjct 12740 TCCTTCTGAATATTGTAATCTGCCAAAGTACGGCCATCCTCCAATTGCTTGCCAGCAAAA 12681 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||||||||||||| || | || | ||| || || || |||| | |||| || | Sbjct 12680 ATCAATCGCTGTTGGTCTGGAGGAATACCCTCCTTGTCCTGGATCTTCGCTTTCACATTA 12621 Query 43039 CCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| || || ||| || || || | || ||||| |||||||| || || ||||| Sbjct 12620 TCAATAGTATC-AGAGCTTTCCACCTCCAAGGTAATAGTCTTTCCGGTCAGGGTCTTCAC 12562 Query 43098 AAAAATTTGCATT 43110 ||| || |||||| Sbjct 12561 AAATATCTGCATT 12549 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || | || || | ||||||||| | ||| |||||| || | |||||||| | Sbjct 11865 GCCACCTCTCAATCGAAGCACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGC 11806 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | | | || || | |||||| || ||||||||||| | ||| ||||| | || Sbjct 11805 TAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAAAATCAACCTCTGCTGATCTGGAGG 11746 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || |||| | | ||||| || ||| ||||| | ||| || Sbjct 11745 GATGCCCTCTTTATCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCCGAGGACTCAAC 11686 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || | ||| || ||||| || ||||| Sbjct 11685 CTCAAGGGTGATGGTTTTCCCAGTCAAAGTCTTAACAAAGATCTGCAT 11638 >seq40108 Length=192235 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| |||| | || | ||| | |||| |||||||| | ||||||||| | Sbjct 161002 GCCACCACGAAGTCGAAGGACAAGATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGC 160943 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || ||||||| | || ||||| || || || || ||||| | |||||| || || | || Sbjct 160942 CAGTGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATAAGTCGCTGCTGGTCTGGGGG 160883 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGA 43060 | ||| || || || |||| |||| || | ||| || || ||| | | | Sbjct 160882 AATACCCTCCTTGTCCTGGATCTTTGCTTTCACATTATCAATCGTATCAG-AGCTTTCCA 160824 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| || || || ||||| |||| || || |||||||||||||| Sbjct 160823 CCTCTAAGGTAATGGTCTTTCCTGTTAAGGTCTTGACAAAAATTTGCAT 160775 >seq41040 Length=490441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| || ||| || || | ||||| || | | Sbjct 178518 CCACCACGAAGACGGAGCACCAAATGGAGGGTAGACTCTTTCTGAATGTTGTAGTCAGCC 178577 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || || | ||| || || ||||||||||| | || || || | || Sbjct 178578 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGA 178637 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || ||| | || || || ||| |||||| | ||| ||| || Sbjct 178638 ATACCCTCCTTATCCTGGATTTTGGCCTTCACATTGTCAATTGTGTC-CGAGCTCTCTAC 178696 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || ||||| || || || || |||||||| ||||| ||||| Sbjct 178697 CTCTAAAGTAATAGTCTTGCCAGTAAGGGTTTTCACGAAAATCTGCAT 178744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381162933906912