Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq42527 147 3e-30 seq36964 147 3e-30 seq32367 136 5e-27 seq1704 122 1e-22 seq35886 116 5e-21 seq42083 100 4e-16 seq37232 87.8 2e-12 seq37024 86.0 8e-12 >seq42527 Length=94160 Score = 147 bits (162), Expect = 3e-30 Identities = 403/612 (66%), Gaps = 4/612 (1%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || |||||||||||||| || ||||| || | ||| | |||||||||| Sbjct 58002 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAA 57943 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 ||||||| || ||||| || || || || || ||||| || || | |||| | | | || Sbjct 57942 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAAT-GGCGCAGAAGCTCCCG 57884 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || |||||||| ||||| || || || || | || | ||| | | | | || Sbjct 57883 GAGAAGAAGATCCCTTCCACACAGGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGGTG 57824 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | | ||||| || ||||| ||||| ||||| || || || || || ||||| | | Sbjct 57823 GCGTCGATCCATTTCAACGCCCACTCGGCTTTCTTCTTGACGCAGGGGATGGTTTCCACG 57764 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 || ||||| | | ||||||| || || | || || || | || || || Sbjct 57763 GCGCGGAAGAGGTTGGATTTTTCAGCGGAGTCCTTGATGTAGGTTTCTAACAGGAGGCTG 57704 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 ||||| || || || ||||| || || || ||||| || | |||||| | |||||| Sbjct 57703 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCTGTAGAAGGCGCGTGCCTCG 57644 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 | || ||||| | || | | | || | ||||||| ||||| ||||| | Sbjct 57643 GCGGATTGGACTTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACTATCCCGTCGGAG 57584 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA-TT 42534 || || || || || | || || | || || | |||| ||| | | | | | Sbjct 57583 GCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCG-CCGTCGGTGAGGGAGTC 57525 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||| | || ||| |||| ||| || || || ||||||| || |||||||| || Sbjct 57524 CCAGTGGCGGAGATCGGACGATAGATCAACCTCCTCCGCCGTCCAGAACGATGCTTCGGC 57465 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGG 42654 || || ||||| | ||| || | | ||||| |||||||| || |||| || ||| Sbjct 57464 TTTCTTGTACATTTCCCAAATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGG 57405 Query 42655 ATTTGGTGCAAG 42666 ||||| ||||| Sbjct 57404 GTTTGGAGCAAG 57393 >seq36964 Length=242943 Score = 147 bits (162), Expect = 3e-30 Identities = 403/612 (66%), Gaps = 4/612 (1%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || |||||||||||||| || ||||| || | ||| | |||||||||| Sbjct 59785 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAA 59726 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 ||||||| || ||||| || || || || || ||||| || || | |||| | | | || Sbjct 59725 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAAT-GGCGCAGAAGCTCCCG 59667 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || |||||||| ||||| || || || || | || | ||| | | | | || Sbjct 59666 GAGAAGAAGATCCCTTCCACACAGGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGGTG 59607 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | | ||||| || ||||| ||||| ||||| || || || || || ||||| | | Sbjct 59606 GCGTCGATCCATTTCAACGCCCACTCGGCTTTCTTCTTGACGCAGGGGATGGTTTCCACG 59547 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 || ||||| | | ||||||| || || | || || || | || || || Sbjct 59546 GCGCGGAAGAGGTTGGATTTTTCAGCGGAGTCCTTGATGTAGGTTTCTAACAGGAGGCTG 59487 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 ||||| || || || ||||| || || || ||||| || | |||||| | |||||| Sbjct 59486 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCTGTAGAAGGCGCGTGCCTCG 59427 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 | || ||||| | || | | | || | ||||||| ||||| ||||| | Sbjct 59426 GCGGATTGGACTTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACTATCCCGTCGGAG 59367 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA-TT 42534 || || || || || | || || | || || | |||| ||| | | | | | Sbjct 59366 GCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCG-CCGTCGGTGAGGGAGTC 59308 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||| | || ||| |||| ||| || || || ||||||| || |||||||| || Sbjct 59307 CCAGTGGCGGAGATCGGACGATAGATCAACCTCCTCCGCCGTCCAGAACGATGCTTCGGC 59248 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGG 42654 || || ||||| | ||| || | | ||||| |||||||| || |||| || ||| Sbjct 59247 TTTCTTGTACATTTCCCAAATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGG 59188 Query 42655 ATTTGGTGCAAG 42666 ||||| ||||| Sbjct 59187 GTTTGGAGCAAG 59176 >seq32367 Length=12065 Score = 136 bits (150), Expect = 5e-27 Identities = 243/350 (69%), Gaps = 5/350 (1%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||||| ||| ||||| |||||||| || ||||| || | || | |||||||| | Sbjct 2391 ACATCAGACACGCGAAGTCGCAGTGGAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGA 2450 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | || || || ||||| ||||| ||||| || ||||| || || | |||| | | ||| | Sbjct 2451 ATGTTAGCCCCGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGG-CGCAGAAGCTCCCG 2509 Query 42177 AA-AAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA-CT 42234 | |||||||||||||| || ||| || || | ||| | || | | | | || Sbjct 2510 GAGAAGAAGATTCCTTCCACACACGCGAACGCGACAAGCCGTTCCGCGAAGAAAGTATCT 2569 Query 42235 GTCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 ||| || ||||| || | ||||| ||||| ||||| |||| ||||| | ||||| Sbjct 2570 GTCGAGTGGATCCATTTCAGGGCCCACTCGGCTTTCTTCCTTACGCAAGGAACAGTTTCG 2629 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 || ||| ||||| | | || || || |||| || || || | | | | Sbjct 2630 ATTGCACGGAAGAGTCTGCTCTTCTCCGCGGAGTCCTTAATGTAGGTTTCTAAGAGCAAA 2689 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 || |||||||| || || ||||| |||||||| ||||| ||||||||||| Sbjct 2690 CTGTACATTTCCGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAA 2739 >seq1704 Length=114806 Score = 122 bits (134), Expect = 1e-22 Identities = 401/616 (65%), Gaps = 8/616 (1%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || |||||||||||||| || ||||| || | || | |||||||| | Sbjct 97654 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGA 97595 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 ||||||| || ||||| || || || ||||| | ||| || || | |||| | | | || Sbjct 97594 ACGTGAGCCCCGGCATGAGACCGCGTTTTTTCAACCAGAAGATCG-CGCAGAAGCTCCCG 97536 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || |||||||| ||||| || || ||||||| | | | |||| | | | | Sbjct 97535 GAGAAGAAGATCCCTTCCACGCAGGCGAAGGCAACCA--CCCGCTCCGCGAAGGAATCCG 97478 Query 42236 --TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 | | ||||| || ||||| ||||| ||||| || || || || ||||| | Sbjct 97477 ATGCGTCGATCCATTTCATCGCCCACTCGGCTTTCTTCGCGACGCAGGGGATGGTTTCGA 97418 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 ||| | ||||| || ||| || | || || | || || || | || || | Sbjct 97417 CGGCGTGGAAGAGGCGGTGTTTCTCGGTGGAGTCCTTGATGTAGGTTTCTAACAGGAGGC 97358 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 | ||||| || || || ||||| || ||||| ||||| || |||||||| | || | Sbjct 97357 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGTGCTT 97298 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 ||| | || |||||| | || | | | || | ||||||| || || ||||| Sbjct 97297 CGGCGATTTGGACTTCTTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCGTCGG 97238 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA- 42532 ||| || || || || | || || | || || | |||| ||| ||| | | Sbjct 97237 AGGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCG-CCGTCGTTGAGGGAG 97179 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 | ||| || || || | || | || |||||||| | ||||| || || || Sbjct 97178 TCCCAGTCGCGGAGGTCGTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAGGAGGCGAGG 97119 Query 42593 GCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTT 42652 || || || ||||| | |||||| || | ||||| |||||||| || || | | | Sbjct 97118 GCTTTCTTGTACATTTGCCAGATTTCGGGGTATTGGATTGGGAACATGCAGAAGCGGTCT 97059 Query 42653 GGATTTGGTGCAAGGA 42668 || || |||||||||| Sbjct 97058 GGGTTGGGTGCAAGGA 97043 >seq35886 Length=22054 Score = 116 bits (128), Expect = 5e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| ||||| || | || |||||||| || || |||||| ||||||||| | || | Sbjct 12060 GTTCCTGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTCAGACAACAAATGG 12119 Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || | | ||| ||||| ||||| | ||| || ||||| || || || | ||| || Sbjct 12120 TAGGTTTTGACAGCCGATTCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 12178 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| |||||||| ||||| || | ||| | || ||||| | ||||||| | || | Sbjct 12179 CATGTGCTGAGGCCTTTCCACAACCTTTCCTTGTACCTTCAAGAGGTAGGATCTCTCAAG 12238 Query 72597 AGTTTTAAAACCAAAATA 72614 ||||| ||||||||||| Sbjct 12239 GGTTTTGAAACCAAAATA 12256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 72199 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCG 72258 || || ||||| | || | |||||| || | || |||||||||| ||||| ||||| Sbjct 11720 GCAGTATTATTGAACACGCGCAACATGGGGACGATTCCATTGGATGTCCCATTAGTCCCA 11779 Query 72259 GAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318 || || ||||| | |||||||| ||| || || | ||| ||||| || || | Sbjct 11780 CCAATGTAACTTCCTGTTGCACGAATGTTGTGAACAGAGACACCAATTCCTCCAGCTGAT 11839 Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378 ||| ||| | || || || || || ||||| || ||||||||||||||||| | Sbjct 11840 TTACTGATGACAGCACACTCCTTCAAAGTCTCATATATACCCTCTATACTATCATCTTGC 11899 Query 72379 ATGTTAAGTAGAAAACAGCTA 72399 ||| | |||||| || ||| Sbjct 11900 ATGCACACTAGAAAGCAACTA 11920 >seq42083 Length=66024 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | ||| || | ||| | || | || ||| |||| || ||| Sbjct 46253 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAACACGCGCAGCATGGGAACAACACC 46194 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||| | ||||| || ||| || || || || |||||||||| ||| || || Sbjct 46193 ATTGGAAGTCCCATTAGTTCCGCGAATGTAACTGCCCATGGCACGAATGTTGTGAACAGA 46134 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| |||||| ||| || | || || || || |||||||| || Sbjct 46133 AACACCAATTCCTCCTGCCGATTTGCTAATGACAGCACACTCCTTCAAAGTATCATAAAT 46074 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 ||||||||||||||||| ||||| Sbjct 46073 CCCCTCTATACTATCATCTTTCATG 46049 >seq37232 Length=10575 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| |||||| || ||||| ||||| || ||||| || | ||| || |||||||||| Sbjct 7166 ACAACAAACAAGCAAAATCACAGTGAAGCCCCTCGTCACGTGAAATCAACTCGTTGGAAA 7107 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 ||||||| || ||||| || || || || || ||||| || || | | || | | | || Sbjct 7106 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATCG-CACAGAAGCTCCCG 7048 Query 42176 GAAAAGAAGATTCCTTCTAC 42195 || |||||||| ||||| || Sbjct 7047 GAGAAGAAGATCCCTTCCAC 7028 >seq37024 Length=156878 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || |||||||||||||| || ||||| || | || | |||||||| | Sbjct 305 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGA 246 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 ||||||| || ||||| || || || ||||| | ||| || || | |||| | | | || Sbjct 245 ACGTGAGCCCCGGCATGAGACCGCGTTTTTTCAACCAGAAGATCG-CGCAGAAGCTCCCG 187 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAA 42209 || |||||||| ||||| || || ||||||| Sbjct 186 GAGAAGAAGATCCCTTCCACGCAGGCGAAGGCAA 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670766180832640