Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq39663 104 2e-17 seq32376 91.5 1e-13 seq40108 84.2 2e-11 seq7383 82.4 8e-11 >seq39663 Length=443811 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || |||| ||| ||||||| || || || || || |||||||||||| Sbjct 345258 CCGCCTCTCAATCGCAGAACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCG 345317 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || |||||||||||||||||| | ||||| | ||||||||| || || Sbjct 345318 AGGGTCCTTCCATCCTCGAGTTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGG 345377 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| |||||||| || || || | | || | ||||| | || ||| || Sbjct 345378 ATGCCCTCTTTGTCCTGGATCTTCGCCTTCACATTATCAATGGTGTCTGAGGATTCCACC 345437 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || |||||||| || || || || ||||| Sbjct 345438 TCGAGGGTGATTGTTTTACCCGTCAATGTCTTGACAAAGATCTGCAT 345484 >seq32376 Length=6472 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| || |||| || ||||||| ||||| || || || ||||||||||| Sbjct 540 GCCACCTCTCAATCGCAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGC 599 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || ||||| |||||||| |||||| | || || | || ||||| ||||| Sbjct 600 CAAGGTCCTTCCATCTTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGTTGATCTGGAGG 659 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| |||||| || | | || | || || | || ||| || Sbjct 660 GATACCCTCTTTGTCCTGAATTTTCGTCTTCACATTGTCAATGGTATCTGAGGATTCGAC 719 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || ||||| || || || || || ||||| Sbjct 720 CTCAAGGGTGATGGTTTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 767 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | |||| || ||||| | || || || || || ||||||||||| Sbjct 312 GCCACCTCTCAGTCGCAGCACCAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCAGC 371 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || ||||| |||||||| |||||| | || || | |||||||| || || Sbjct 372 CAAGGTCCTTCCATCTTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGCGG 431 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| ||| || ||| | | || | || || | | ||| || Sbjct 432 GATGCCCTCCTTGTCCTGAATCTTGGATTTCACATTATCAATAGTATCTGAGCTTTCAAC 491 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || ||||| || || || || |||||||| Sbjct 492 CTCCAAAGTTATTGTCTTTCCTGTCAAGGTCTTGACAAAAATTTGCAT 539 >seq40108 Length=192235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| || || | ||| ||||||| || || || || || ||||||||||| Sbjct 160546 GCCGCCTCTCAATCGAAGAACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGC 160487 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || ||| || || |||||||| |||||| | || || | ||||| ||||| || Sbjct 160486 CAAGGTCCTCCCATCCTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGCTGGTCGGGTGG 160427 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||| || |||||||| || || || | | || | ||||| | || ||| || Sbjct 160426 TATACCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCTGAGGATTCGAC 160367 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || || || ||||| || || || || || |||||| Sbjct 160366 CTCGAGGGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCATA 160318 >seq7383 Length=6982 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || ||||||| || ||||| ||||||||||| ||||| | |||| || Sbjct 925 CAAGACCAAATGAAGAGTCGATTCCTTTTGTATGTTATAATCAGCAAGAGTGCGGCCATC 866 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| || || ||||| ||| | |||| | ||||||||| ||||| |||||||| ||||| Sbjct 865 TTCCAGCTGCTTACCGGCAAAAATCAACCTTTGCTGATCCGGAGGGATGCCTTCCTTGTC 806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506732601396480