Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq14423 111 1e-19 seq32376 102 7e-17 seq40108 89.7 4e-13 seq39663 89.7 4e-13 seq14855 89.7 4e-13 seq41040 87.8 1e-12 >seq14423 Length=23748 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | ||||| ||| | || |||||||| || ||||||||||| || Sbjct 12092 CCACCTCTCAATCGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCT 12033 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| |||||||| || ||| ||||||| |||||||| || || Sbjct 12032 AGGGTCCTTCCATCCTCAAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGGTCTGGAGGG 11973 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGT 18993 | ||||||||| || || ||| || || | | | | || || | ||| || Sbjct 11972 ATGCCCTCTTTATCCTGGATCTTCGCCTTGACATTGTCAATGGTGTC-CGAGGATTCAAC 11914 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| |||||||| ||||| || || ||||||||||||||||| Sbjct 11913 CTCGAGGGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAAATTTGCAT 11866 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| |||| ||||||||||| ||||| |||||||| || | ||| | | || Sbjct 12305 AAGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTTCCATCT 12246 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || |||||||| || ||| | ||||| |||||||| || || | |||||| || || Sbjct 12245 TCAAGCTGTTTCCCGGCAAATATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTATCC 12186 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||| || | | | ||||| |||| || | || ||||| Sbjct 12185 TGAATCTTAGCTTTCACATTATCAATGGTATCTGAGCTCTCCACCTCCAAAGTTATGGTC 12126 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| || || ||||||||||||||||| Sbjct 12125 TTTCCTGTCAAGGTCTTGACAAAAATTTGCAT 12094 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||||||||| |||||||| || | || | ||||||| || ||||| Sbjct 11606 GTAGACTCCTTTTGAATGTTGTAATCAGCAAGGGTGCGACCATCCTCCAATTGCTTACCA 11547 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | ||||| || |||||||| || | || || ||||| |||||| ||| Sbjct 11546 GCAAAGATAAGCCTTTGCTGATCAGGTGGGATCCCTTCCTTGTCTTGGATTTTCGCTTTA 11487 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||| | ||| || | ||||||||| || || || | |||| Sbjct 11486 ACATTGTCAATGGTATCTGAACTTTCCACCTCAAGGGTAATGGTCTTGCCGGTGAGAGTT 11427 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||| ||||| Sbjct 11426 TTCACAAAAATCTGCAT 11410 >seq32376 Length=6472 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | ||||| || | ||||||||||| || || |||||||| ||| Sbjct 541 CCACCTCTCAATCGCAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCC 600 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || || || ||||| || ||| ||||||| ||||| ||||| || Sbjct 601 AAGGTCCTTCCATCTTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGTTGATCTGGAGGG 660 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-T 18993 | ||||||||||| ||||||| || || | | | | ||||| ||| | || Sbjct 661 ATACCCTCTTTGTCCTGAATTTTCGTCTTCACATTGTCAATGGTATC-TGAGGATTCGAC 719 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| |||||||| || || ||||| |||||||| || ||||| Sbjct 720 CTCAAGGGTGATGGTTTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 767 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||||| ||||||||||| ||||| || ||||| || | ||| | | || Sbjct 100 AAGACCAAATGCAAAGTAGACTCCTTCTGAATGTTATAATCAGCAAGAGTTCTACCATCT 159 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || ||| | ||||| ||||||||||| || | |||||| || || Sbjct 160 TCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGCGGGATGCCCTCCTTATCC 219 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||| || | | | |||||| | ||| || | ||||| || Sbjct 220 TGAATCTTTGCTTTCACATTATCAATAGTATCTGAACTTTCCACCTCCAAAGTAATTGTC 279 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| || || ||||||||||||||||| Sbjct 280 TTTCCTGTCAAGGTCTTGACAAAAATTTGCAT 311 >seq40108 Length=192235 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | || ||||||| |||| ||||||||||| ||||| || ||||| || Sbjct 160773 CCTCCACGAAGCCGCAACACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGCA 160714 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || |||||||| || ||| | || || |||||||| || || Sbjct 160713 AGGGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGCGGG 160654 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| ||| || ||| || | | | |||||| ||| Sbjct 160653 ATGCCCTCCTTGTCCTGAATCTTGGCTTTCACATTATCAATAGTATCTGAGCTTTCCACC 160594 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || ||||| || || || |||||||||||||| Sbjct 160593 TCCAACGTTATTGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 160547 >seq39663 Length=443811 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||||| || |||||||| || ||||||||||| |||| || | | || Sbjct 344817 AAAACCAAGTGCAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTCCTACCATCT 344876 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||||||| || || ||| | ||||| |||||||| || || | ||||| || || Sbjct 344877 TCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATACCCTCCTTATCC 344936 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||| || | | | |||||| | ||| || | || ||||| Sbjct 344937 TGAATCTTAGCTTTCACATTATCAATAGTATCAGAACTCTCAACCTCCAATGTTATGGTC 344996 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||||||| || ||||| |||||||| Sbjct 344997 TTCCCGGTTAAAGTCTTAACAAAGATTTGCAT 345028 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| || |||||||| || ||||| ||||| |||| ||| | ||||||| ||| Sbjct 344598 TGCAGGGTGGACTCCTTCTGGATATTATAATCTGCCAAAGTTCGACCATCCTCCAACTGC 344657 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| |||| |||| |||||| || || | ||||||||||| ||| ||| Sbjct 344658 TTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGAATCTTC 344717 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 || || | | | | |||||| ||| || | |||||||| || ||||| Sbjct 344718 GCCTTAACATTGTCAATTGTATCGGAGCTTTCCACCTCCAATGTAATGGTCTTCCCTGTC 344777 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 || || || ||||| |||||||| Sbjct 344778 AAGGTCTTCACAAAGATTTGCAT 344800 >seq14855 Length=14869 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | ||||| || | ||||| ||||| || || |||||||| || Sbjct 13009 CCACCTCTCAATCGAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCA 13068 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||||||||| || || ||| |||| | || ||||||||| || Sbjct 13069 AGGGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAAATCAACCTTTGCTGATCCGGAGGA 13128 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| || ||| || || | ||| ||| || | || Sbjct 13129 ATACCCTCTTTGTCTTGGATCTTCGCCTTGACATTATCGATAGTGTCTGAGGATTCAACC 13188 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| |||||||| ||||| || || |||||||| || ||||| Sbjct 13189 TCGAGGGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 13235 >seq41040 Length=490441 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||| | ||| | || ||||| || ||||| |||||||| |||| |||| || | ||| Sbjct 179217 AACACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCAGCCAATGTTCTGTCATCC 179276 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || |||||||| || || | || || |||||||| || || | |||||||||||| Sbjct 179277 TCAAGCTGTTTGCCAGCGAATATGAGCCTCTGCTGGTCTGGAGGGATGCCCTCTTTGTCC 179336 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || || || | | | | || || |||| || | ||| ||||| Sbjct 179337 TGAATCTTGGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTC 179396 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || || || || || ||||| || |||||| Sbjct 179397 TTTCCAGTCAATGTCTTCACAAAGATCTGCATT 179429 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || ||||| || |||| ||||| || |||| ||| || | || || Sbjct 167772 CACCAAGTGTAGGGTGGACTCTTTCCGAATGTTGTAGTCGGCCAAGGTTCTGCCATCTTC 167831 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||||||||| ||| | || || ||||| || || || | |||||||||||| Sbjct 167832 AAGCTGTTTACCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTG 167891 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | | || || |||| || | ||| ||||| || Sbjct 167892 AATTTTGGCCTTCACATTGTCAATTGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTT 167951 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || |||||||||||||| Sbjct 167952 TCCAGTGAGGGTCTTCACAAAAATTTGCAT 167981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414348140926816