Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq43196 98.7 7e-16 seq39663 89.7 4e-13 seq14423 89.7 4e-13 seq40108 87.8 1e-12 >seq43196 Length=72091 Score = 98.7 bits (108), Expect = 7e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || |||||||| ||||||| ||||||||| | || | |||||| | Sbjct 32136 CATCCTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCT 32195 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| ||||||| || || | ||| ||||| | |||||| || | |||| Sbjct 32196 TGTCTTGAATTTTTGCCTTCACGTTGTCAATGGTATCGGAGCTCTCCACCTCCAGGGTAA 32255 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||| || || ||||||||||| || ||||| Sbjct 32256 TGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 32292 >seq39663 Length=443811 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||||| | |||||||| || ||| ||| || || || || |||||| Sbjct 345257 ACCGCCTCTCAATCGCAGAACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 345316 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | |||| || | |||||| || ||||| |||| || |||||| || | || Sbjct 345317 GAGGGTCCTTCCATCCTCGAGTTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGG 345376 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| || || || || || || ||| || |||| | ||||| Sbjct 345377 GATGCCCTCTTTGTCCTGGATCTTCGCCTTCACATTATCAATGGTGTCTGAGGATTCCAC 345436 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||| || ||||||||||| || || ||||| ||||| || |||||| Sbjct 345437 CTCGAGGGTGATTGTTTTACCCGTCAATGTCTTGACAAAGATCTGCATG 345485 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| || ||| ||| || || ||||||||||| || || |||| ||||| || Sbjct 344597 ATGCAGGGTGGACTCCTTCTGGATATTATAATCTGCCAAAGTTCGACCATCCTCCAACTG 344656 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTGAAATTT 44036 || || ||||| |||| || |||||||| |||| | ||| ||||| | ||||| | Sbjct 344657 CTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGAA--TC 344714 Query 44037 TTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCG 44095 || | | | ||| | ||| ||||| | ||||| || | ||||| || || || Sbjct 344715 TTCGCCTTAACATTGTCAATTGTATCGGAGCTTTCCACCTCCAATGTAATGGTCTTCCCT 344774 Query 44096 GTTAAAGTCTTCACAAATATTTGCAT 44121 || || ||||||||||| |||||||| Sbjct 344775 GTCAAGGTCTTCACAAAGATTTGCAT 344800 >seq14423 Length=23748 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| || ||| || || |||||||| ||||| || ||| |||| |||||||| Sbjct 12753 ATGCAGGGTGGATTCCTTCTGAATATTGTAATCTGCCAAAGTACGGCCATCCTCCAATTG 12694 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 || || ||||| ||||| || || ||||| |||| | ||| || || || || || Sbjct 12693 CTTGCCAGCAAAAATCAATCGCTGTTGGTCTGGAGGAATACCCTCCTTGTCCTGGATCTT 12634 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 ||| || || ||| |||||| | ||||| || | ||||| || || ||||| Sbjct 12633 CGCTTTCACATTATCAATAGTATCAGAGCTTTCCACCTCCAAGGTAATAGTCTTTCCGGT 12574 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 | |||||||||||||| ||||| Sbjct 12573 CAGGGTCTTCACAAATATCTGCAT 12550 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| || || ||| || || || ||||||||||| | ||| |||| Sbjct 12533 AAAACCAAGTGCAGAGTGGATTCCTTCTGGATATTATAATCAGCAAGGGTCCGCCCATCT 12474 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| || || || ||||| || | || ||||||||| | || | ||| ||||| || Sbjct 12473 TCCAACTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCC 12414 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || || || || ||| ||||| | ||| || || | ||||| || Sbjct 12413 TGGATCTTCGCCTTAACATTATCAATGGTATCAGAACTCTCAACCTCCAAGGTAATGGTC 12354 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || ||||||||||||||||| || |||||| Sbjct 12353 TTCCCAGTTAAAGTCTTCACAAAAATCTGCATG 12321 >seq40108 Length=192235 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| || || ||| || ||||| |||||||| | | |||| Sbjct 160758 AACACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGCAAGGGTTCTTCCATCT 160699 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | |||||||| ||||| || | || |||||||| | || | || || || || Sbjct 160698 TCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 160639 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || ||| || || ||| |||||||| ||||| || | ||| ||||| Sbjct 160638 TGAATCTTGGCTTTCACATTATCAATAGTATCTGAGCTTTCCACCTCCAACGTTATTGTC 160579 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 || || || || ||||||||||| ||||||||| || Sbjct 160578 TTTCCTGTCAAGGTCTTCACAAAAATTTGCATGCCG 160543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354585344244672