Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq32376 116 3e-21 seq40108 98.7 8e-16 seq14423 93.3 4e-14 seq41040 86.0 5e-12 seq14855 86.0 5e-12 seq7383 82.4 6e-11 >seq32376 Length=6472 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| || | || ||||||||| || ||||| || || || ||||||||||| || Sbjct 541 CCACCTCTCAATCGCAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCC 600 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | |||||| | |||||| || ||| ||||||||||||||||||| || Sbjct 601 AAGGTCCTTCCATCTTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGTTGATCTGGAGGG 660 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || |||||||| |||||| ||||| | | ||| | ||| | ||| Sbjct 661 ATACCCTCTTTGTCCTGAATTTTCGTCTTCACATTGTCAATGGTATCTGAGGATTCGACC 720 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| |||||||| || ||||| || |||||||| || ||||| Sbjct 721 TCAAGGGTGATGGTTTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 767 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | || ||| |||||||| | ||||| || || || ||||| ||||| | Sbjct 85 CCACCACGAAGCCGCAAGACCAAATGCAAAGTAGACTCCTTCTGAATGTTATAATCAGCA 144 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGG 20100 | |||| || |||||| | || || || ||| | ||||||||||| ||||| | |||| Sbjct 145 AGAGTTCTACCATCTTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGCGGG 204 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT 20160 | ||| || || || ||| ||| |||||| | ||| || ||| | |||| Sbjct 205 -ATGCCCTCCTTATCCTGAATCTTTGCTTTCACATTATCAATAGTATCTGAACTTTCCAC 263 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| || || || ||||| || ||||||||||||||||| Sbjct 264 CTCCAAAGTAATTGTCTTTCCTGTCAAGGTCTTGACAAAAATTTGCAT 311 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || |||||||||||| || || || || || ||||||||||| ||| || | ||| Sbjct 327 CAGCACCAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTCCTTCCATC 386 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGGCACGCCTTCTTTGT 20114 ||| | |||||| || ||| ||||||||||||| ||||| | |||| | ||| || |||| Sbjct 387 TTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGCGGG-ATGCCCTCCTTGT 445 Query 20115 CGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGG 20174 | ||| || |||||| | ||| || ||| ||| |||| || || | Sbjct 446 CCTGAATCTTGGATTTCACATTATCAATAGTATCTGAGCTTTCAACCTCCAAAGTTATTG 505 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || || ||||| || ||||||||||||||||| Sbjct 506 TCTTTCCTGTCAAGGTCTTGACAAAAATTTGCAT 539 >seq40108 Length=192235 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| || | || |||||||||||| || ||||| || || || ||||| ||||| | Sbjct 160773 CCTCCACGAAGCCGCAACACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGCA 160714 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGG 20100 | ||| | |||||| | ||||| || ||| | || |||||||| || || | |||| Sbjct 160713 AGGGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGCGGG 160654 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT 20160 | ||| || ||||| ||| || |||||| | ||| || ||| |||| Sbjct 160653 -ATGCCCTCCTTGTCCTGAATCTTGGCTTTCACATTATCAATAGTATCTGAGCTTTCCAC 160595 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || || || || || ||||| || || |||||||||||||| Sbjct 160594 CTCCAACGTTATTGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 160547 >seq14423 Length=23748 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | || ||| |||||||| || ||||| || || || ||||||||||| | Sbjct 12320 CCACCACGAAGCCGCAAGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAATCAGCA 12261 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| | ||||| || ||| | ||||||||||| || || || Sbjct 12260 AGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAATATAAGCCTCTGCTGGTCTGGTGGG 12201 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | ||| || || || ||| || |||||| | ||| | ||| || | ||| Sbjct 12200 ATGCCCTCCTTATCCTGAATCTTAGCTTTCACATTATCAATGGTATC-TGAGCTCTCCAC 12142 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||| || || ||||| || ||||||||||||||||| Sbjct 12141 CTCCAAAGTTATGGTCTTTCCTGTCAAGGTCTTGACAAAAATTTGCAT 12094 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||| || ||||| ||||||||||| | | || | ||| |||||||| Sbjct 11612 TGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGCAAGGGTGCGACCATCCTCCAATTGC 11553 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| | |||||||| || ||||| || | ||||| ||||| ||||| Sbjct 11552 TTACCAGCAAAGATAAGCCTTTGCTGATCAGGTGGGATCCCTTCCTTGTCTTGGATTTTC 11493 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 ||| || | | ||| | ||| | |||| || | ||||||||| |||||||| Sbjct 11492 GCTTTAACATTGTCAATGGTATCTGAACTTTCCACCTCAAGGGTAATGGTCTTGCCGGTG 11433 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 | ||||| |||||||| ||||| Sbjct 11432 AGAGTTTTCACAAAAATCTGCAT 11410 >seq41040 Length=490441 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| ||||| || || ||||| | |||||||| ||| ||| ||| | |||||| Sbjct 167772 CACCAAGTGTAGGGTGGACTCTTTCCGAATGTTGTAGTCGGCCAAGGTTCTGCCATCTTC 167831 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | ||||| || ||| | || ||||||||||| || || | ||| |||||||| Sbjct 167832 AAGCTGTTTACCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTG 167891 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTT 20177 |||||| ||||| | | ||| | || || | ||| || | ||| ||||| | Sbjct 167892 AATTTTGGCCTTCACATTGTCAATTGTGTC-AGAGCTCTCCACCTCAAGGGTGATGGTCT 167950 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || || | || || |||||||||||||| Sbjct 167951 TTCCAGTGAGGGTCTTCACAAAAATTTGCAT 167981 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| ||||| || || ||||| || |||||||| ||| ||| ||| | |||||| Sbjct 178991 CACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCCAAGGTTCTGCCATCTTC 179050 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | ||||| || ||| | || ||||||||||| || || | ||| |||||||| Sbjct 179051 AAGCTGTTTACCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTG 179110 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTT 20177 |||||| ||||| | | ||| | || || | || |||| ||||| || | Sbjct 179111 AATTTTGGCCTTCACATTGTCAATTGTGTC-TGAGCTCTCTACCTCCAAAGTAATTGTCT 179169 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || | || || |||||||| ||||| Sbjct 179170 TGCCAGTAAGGGTCTTCACAAAAATCTGCAT 179200 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || ||||| || ||||||||||| ||| |||| | ||| || | ||| Sbjct 178314 TGGAGGGTGGACTCTTTCTGAATGTTGTAATCAGCCAAAGTTCTGCCATCCTCAAGCTGT 178373 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| | || ||||||||||| || || | |||||||||||| |||||| Sbjct 178374 TTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGAATTTTA 178433 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 ||||| | | | | | || | ||| || | ||| ||||| || || || Sbjct 178434 GCCTTCACGTTGTCGATGGTGTCAGAACTCTCCACCTCAAGGGTGATGGTCTTTCCAGTG 178493 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 | || |||||||| |||||||| Sbjct 178494 AGGGTCTTGACAAAGATTTGCAT 178516 >seq14855 Length=14869 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | || ||| ||||| || |||||||| || || || ||||| ||||| Sbjct 12325 CCACCACGAAGCCGCAAAACCAAGTGCAGTGTAGACTCCTTCTGGATGTTATAATCTGAA 12384 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||| || || || ||| | ||||| ||||| ||||| || Sbjct 12385 AGGGTTCTTCCATCTTCCAACTGCTTCCCAGCAAAGATAAGTCTCTGCTGATCCGGAGGG 12444 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || ||| || |||||| | | ||| | ||| | || Sbjct 12445 ATACCTTCCTTATCCTGAATCTTAGCTTTCACATTGTCAATTGTATCAGAACTCTCAACC 12504 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||| || || ||||| || || |||||||||||||| Sbjct 12505 TCCAGAGTTATGGTCTTCCCCGTCAATGTCTTCACAAAAATTTGCAT 12551 >seq7383 Length=6982 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||| | | |||||| |||||||| || || ||||| |||||||| Sbjct 952 TTTAATCATAGTTCCTCCCCTGAGCCTCAAGACCAAATGAAGAGTCGATTCCTTTTGTAT 893 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||| ||||| | | ||| |||||||| || || || ||| |||| | ||| || Sbjct 892 GTTATAATCAGCAAGAGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATCAACCTTTG 833 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | |||||| ||||| Sbjct 832 CTGATCCGGAGGGATGCCTTCCTTGTC 806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419359823598384