Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq41040 105 6e-18 seq14423 102 7e-17 seq38321 95.1 1e-14 seq43196 91.5 1e-13 seq14855 82.4 6e-11 >seq41040 Length=490441 Score = 105 bits (116), Expect = 6e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| ||||| || ||| ||||||||| ||||||||||||| ||| || ||| | |||| Sbjct 179447 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAG-CAAGGGTACGCCCATCCT 179505 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || | |||| | ||||||||| ||| || | | |||||| || Sbjct 179506 CCAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTT 179565 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 |||||| ||| | | |||||||||| | | ||| |||| || ||||| | Sbjct 179566 GAATTTTAGCCTTCACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCT 179625 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || || || || || ||||| || |||||| Sbjct 179626 TGCCAGTAAGGGTCTTGACAAAGATTTGCATC 179657 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| ||||| || ||| ||| ||||| ||||||||||||| ||| || ||| | |||| Sbjct 173559 CACCAAATGGAGGGTGGACTCTTTTTGGATGTTGTAATCAG-CAAGGGTACGCCCATCCT 173617 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || |||| | ||||||||| ||| || | | |||||| || Sbjct 173618 CCAGCTGCTTGCCAGAAAAAATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTT 173677 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 |||||| ||| | | |||||||||| | | ||| || | || ||||| | Sbjct 173678 GAATTTTAGCCTTCACATTGTCTATGGTATCTGAACTCTCAACTTCAAGAGTAATGGTCT 173737 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || || || || || ||||| || |||||| Sbjct 173738 TGCCAGTAAGGGTCTTGACAAAGATTTGCATC 173769 >seq14423 Length=23748 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||||||||||||||||||||| || || || | ||||||| || Sbjct 11612 TGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGC-AAGGGTGCGACCATCCTCCAATTG 11554 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | | || | | |||||||| || | | ||||||||| ||||| Sbjct 11553 CTTACCAGCAAAGATAAGCCTTTGCTGATCAGGTGGGATCCCTTCCTTGTCTTGGATTTT 11494 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | || | | | |||||||| | | ||| ||| | || ||||| || ||||| Sbjct 11493 CGCTTTAACATTGTCAATGGTATCTGAACTTTCCACCTCAAGGGTAATGGTCTTGCCGGT 11434 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||||||||||||||||||||||||| Sbjct 11433 GAGAGTTTTCACAAAAATCTGCATC 11409 >seq38321 Length=259108 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| ||||| || ||| || |||| |||||||| Sbjct 81890 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGTGTGCGGCCGTCTTCCAGCTG 81948 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||| ||| || | | |||||||| || || Sbjct 81949 CTTCCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATCTT 82008 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || || || |||| |||||| ||||| || || || || || Sbjct 82009 GGCCTTGACGTTGTCG--ATTGTGTCGGATGACTCCACCTCGAGGGTGATCGTCTTCCCC 82066 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATC 48727 || || |||||||| || ||||||||| Sbjct 82067 GTTAGGGTTTTCACGAAGATCTGCATC 82093 >seq43196 Length=72091 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTG 48582 ||||| ||| |||||| ||||||||||| |||| ||| ||| | | ||||||| ||| Sbjct 32090 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAG-CAAGGGTCCTTCCATCCTCCAACTG 32148 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || || | |||||| ||| || | || ||||||||| |||||| Sbjct 32149 CTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTGTCTTGAATTTT 32208 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | |||||||||| |||| ||| | || ||||| ||||| || Sbjct 32209 TGCCTTCACGTTGTCAATGGTATCGGAGCTCTCCACCTCCAGGGTAATGGTCTTACCAGT 32268 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || |||||||| |||||||| Sbjct 32269 CAAGGTCTTCACAAAGATCTGCAT 32292 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCT 48575 ||| | |||||| ||| |||||| || ||||||||||| || || ||| || |||| Sbjct 32311 CACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGC-AAGAGTCCTTCCATCCT 32369 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | ||||||||||| | |||| || | |||||||||| || | || ||||| ||| Sbjct 32370 CGAGCTGCTTACCAGCAAAAATCAACCTCTGCTGATCCGGGGGAATACCCTCCTTATCCT 32429 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | ||||| || | |||| ||| | || ||||| | Sbjct 32430 GGATCTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGAGTGATGGTCT 32489 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || | ||| ||||| ||||||||||| Sbjct 32490 TACCAGTCAAAGTCTTCACGAAAATCTGCAT 32520 >seq14855 Length=14869 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| | | ||| |||||||| || ||||| || |||||||||||||| Sbjct 13008 ACCACCTCTCAATCGAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGC 13067 Query 48559 CAATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || |||||||||||||| || | |||| || | ||||||||| | Sbjct 13068 -AAGGGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAAATCAACCTTTGCTGATCCGGAG 13126 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || || ||||| || ||| ||||| | | || || || | || || Sbjct 13127 GAATACCCTCTTTGTCTTGGATCTTCGCCTTGACATTATCGATAGTGTCTGAGGATTCAA 13186 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || |||||||| || || | || || ||||| |||||||| Sbjct 13187 CCTCGAGGGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 13235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421022921868464