Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq7989 122 5e-23 seq37412 113 2e-20 seq44330 111 8e-20 seq41204 109 3e-19 seq40669 109 3e-19 seq29312 109 3e-19 seq42022 107 1e-18 seq38179 107 1e-18 seq43183 105 3e-18 seq40385 105 3e-18 seq43052 100 1e-16 seq39377 98.7 5e-16 seq38454 96.9 2e-15 seq38812 95.1 6e-15 seq16252 93.3 2e-14 seq43184 91.5 8e-14 seq38613 91.5 8e-14 seq37342 82.4 4e-11 >seq7989 Length=5257 Score = 122 bits (134), Expect = 5e-23 Identities = 93/108 (86%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 11440 TAATAAAAAAT-CAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||| ||||||| ||||| ||||||||| | | |||||||| |||||||||||||||||| Sbjct 4567 TAAAAAAAAATACAAATGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAG 4626 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTGTGATT 11545 ||||||||||| |||| |||||||||| |||||| | | |||||| || Sbjct 4627 CACGACGCTCTAACCAGCTGAGCTAATAGGCCGTTGGCAATTGTGCTT 4674 >seq37412 Length=108642 Score = 113 bits (124), Expect = 2e-20 Identities = 81/94 (86%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 70443 AAAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 70384 Query 11512 CAACTGAGCTAATGGGCCGTCGACGATTGTGATT 11545 || |||||||||| |||||| | | |||||| || Sbjct 70383 CAGCTGAGCTAATAGGCCGTTGGCAATTGTGCTT 70350 >seq44330 Length=7317 Score = 111 bits (122), Expect = 8e-20 Identities = 78/89 (88%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| ||||| ||||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 548 AATGAAAAA--AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 605 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 606 GACGCTCTAACCAGCTGAGCTAATAGGCC 634 >seq41204 Length=59708 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11444 AAAAA--ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||| |||||| ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 25472 AAAAATGATCAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 25531 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||| |||||||||| |||| Sbjct 25532 ACGCTCTAACCAGCTGAGCTAATAGGCC 25559 >seq40669 Length=154132 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11444 AAAAA--ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||| |||||| ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 128649 AAAAATGATCAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 128590 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||| |||||||||| |||| Sbjct 128589 ACGCTCTAACCAGCTGAGCTAATAGGCC 128562 >seq29312 Length=9836 Score = 109 bits (120), Expect = 3e-19 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| |||| ||||||||| | | || ||||| |||||||||||||||||||||||||| Sbjct 8701 AAAAACAAAATGGCCCATGGAGGTCTCAAACCTGCGACCTTCGCGTTATTAGCACGACGC 8760 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 8761 TCTAACCAACTGAGCTAATAGGCC 8784 >seq42022 Length=12327 Score = 107 bits (118), Expect = 1e-18 Identities = 79/92 (86%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 11440 TAATAAAAAATC--AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||| ||||||| ||| ||||||||| | | |||||||| ||||||| |||||||||| Sbjct 12025 TAAAAAAAAATACAAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAG 11966 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||| |||||||||||||||||||| Sbjct 11965 CACCACGCTCTAACCAACTGAGCTAATGGGCC 11934 >seq38179 Length=97365 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 70335 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 70394 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 70395 CAGCTGAGCTAATAGGCC 70412 >seq43183 Length=16793 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 10637 AACAAAAAATAGA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 10580 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 10579 GACGCTCTAACCAACTGAGCTAATAGGCC 10551 Score = 91.5 bits (100), Expect = 8e-14 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 11473 GAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 16123 GAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 16067 >seq40385 Length=50722 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 26224 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 26165 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 26164 CTGAGCTAATAGGCC 26150 >seq43052 Length=6696 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||| ||||||||||||| ||||||| |||||| Sbjct 5369 TGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 5310 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 5309 TGAGCTAATGGGCC 5296 >seq39377 Length=342469 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||||||| || | | |||||||| |||||||||||||||||||||||| Sbjct 106424 AAAAAT--AATTGGCCTATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 106367 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 106366 CTCTAACCAACTGAGCTAATAGGCC 106342 >seq38454 Length=38330 Score = 96.9 bits (106), Expect = 2e-15 Identities = 75/89 (84%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11444 AAAAAATC--AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| ||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 7062 AAAAAATACAAAAGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACG 7003 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| |||| |||||||||| ||||| Sbjct 7002 ACGCTCTAACCAGCTGAGCTAATAGGCCG 6974 >seq38812 Length=57938 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| |||| ||||| || | | |||||||| |||||||||||||||||||| Sbjct 41516 AAGAAAAACGCAAAATGGCCTATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 41457 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 41456 GACGCTCTAACCAGCTGAGCTAATAGGCC 41428 >seq16252 Length=3885 Score = 93.3 bits (102), Expect = 2e-14 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | |||| |||| || | | |||||||| |||||||||||||||||||| Sbjct 2715 AATAAAAGAAAAAAT-GGCCTATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 2657 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| |||| |||||||||| ||||| Sbjct 2656 GACGCTCTAACCAGCTGAGCTAATAGGCCG 2627 >seq43184 Length=8095 Score = 91.5 bits (100), Expect = 8e-14 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 11473 GAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 187 GAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 131 >seq38613 Length=252924 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 44815 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 44756 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 44755 TGAGCTAATAGGCC 44742 >seq37342 Length=11528 Score = 82.4 bits (90), Expect = 4e-11 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 11481 GACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 10904 GACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 10952 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261349496611264