Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq41758 147 3e-31 seq41756 147 3e-31 seq16923 95.1 2e-15 seq8093 91.5 2e-14 seq12158 86.0 1e-12 >seq41758 Length=28091 Score = 147 bits (162), Expect = 3e-31 Identities = 192/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| | | ||| | ||||||||||| |||||||||||||| || || Sbjct 14638 GCTAAGCGTCACAGGAAGGTTCTGAGGGATAACATCCAGGGAATCACCAAGCCTGCCATT 14579 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | |||||||| || |||||| || || | |||||||||| | | Sbjct 14578 CGCCGTCTCGCAAGGCGTGGTGGTGTGAAGCGTATCAGCGGTCTCATCTATGAAGAAACT 14519 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | |||||||||||| ||| |||||| | ||||||| | ||| || ||| Sbjct 14518 CGCGGTGTTCTCAAGATCTTCCTCGAGAACGTTATTCGTGATGCTGTTACCTACACTGAG 14459 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || |||||||| || | ||||| | || || || | || | || ||| Sbjct 14458 CACGCTCGCCGCAAGACTGTGACGGCGATGGACGTTGTTTACGCTCTCAAGAGGCAGGGC 14399 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | |||||||| || |||| Sbjct 14398 AGGACCCTCTATGGTTTCGGTGGTTA 14373 >seq41756 Length=20031 Score = 147 bits (162), Expect = 3e-31 Identities = 192/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | ||| | ||||||||||| |||||||||||||| || || Sbjct 15888 GCGAAGCGTCACCGGAAGGTTCTGAGGGATAACATCCAGGGAATCACCAAGCCTGCGATT 15829 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | ||||| || || |||||| || || | ||||||| || | | Sbjct 15828 CGCCGTCTCGCAAGGCGTGGCGGTGTGAAGCGTATCAGCGGTCTCATCTATGAGGAAACT 15769 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | |||||||||||| ||| |||||| | ||||||| | ||| || ||| Sbjct 15768 CGCGGTGTTCTCAAGATCTTCCTCGAGAACGTTATTCGTGATGCTGTTACCTACACTGAG 15709 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| ||||||||||| || | |||||| | || || || | || | || ||| Sbjct 15708 CACGCTCGCCGTAAGACTGTGACGGCGATGGATGTTGTTTACGCTCTCAAGAGGCAGGGC 15649 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | |||||||| || |||| Sbjct 15648 AGGACCCTCTATGGTTTCGGTGGTTA 15623 >seq16923 Length=10807 Score = 95.1 bits (104), Expect = 2e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || || || | |||| | | ||| Sbjct 2380 CTGCGCGACAACATCCAGGGCATCACGAAGCCGGCGATTCGGAGGTTGGCGAGGAGAGGT 2321 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || ||| ||| ||||||| |||| | | | ||| |||||||||||| Sbjct 2320 GGCGTGAAGAGGATCAGTGGGTTGATCTATGAGGAGACTAGGGGTGTGTTGAAGATCTTC 2261 Query 16574 CTCAAGACCGTTATCCATGATGC-TTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| || || | |||||| || || || |||||||| || | | |||||||| Sbjct 2260 TTGGAGAATGTGATTCGTGATGCGGTTACA-TACACCGAGCATGCGAGGAGGAAGACTGT 2202 Query 16633 CACCTCCATGGATATCGTCTATGC 16656 || | |||||| | || ||||| Sbjct 2201 TACTGCTATGGATGTTGTTTATGC 2178 >seq8093 Length=10075 Score = 91.5 bits (100), Expect = 2e-14 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || || || | |||| | | ||| Sbjct 5375 CTGCGCGACAACATCCAGGGCATCACGAAGCCGGCGATTCGGAGGTTGGCGAGGAGAGGT 5316 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || ||| ||| ||||||| |||| | | | ||| |||||||||||| Sbjct 5315 GGCGTGAAGAGGATCAGTGGGTTGATCTATGAGGAGACTAGGGGTGTGTTGAAGATCTTC 5256 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | |||||| | || || ||||| |||| | |||||||| Sbjct 5255 TTGGAGAATGTGATTCGTGATGCGGTGACGTACACGGAGCATGCTAGGAGGAAGACTGTG 5196 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || | |||||| | || ||||| Sbjct 5195 ACTGCTATGGATGTTGTTTATGC 5173 >seq12158 Length=6864 Score = 86.0 bits (94), Expect = 1e-12 Identities = 167/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || ||||||||||| ||||| ||||| || || || | ||||| | | || Sbjct 3332 TCTGCGCGACAACATCCAAGGCATCACGAAGCCCGCGATTCGGAGGCTGGCGAGGAGAGG 3391 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||| | || || | |||| || || | | | || | |||||||| Sbjct 3392 CGGCGTGAAGAGGATCAGCGGTCTCATCTACGAGGAAACCAGGGGAGTGCTCAAGATCTT 3451 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| ||| |||| |||||| | || || |||||||| | | ||||| || Sbjct 3452 CTTGGAGAACGTGATCCGTGATGCGGTGACGTACACGGAGCACGCCAGGAGGAAGACGGT 3511 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| |||||||| |||| ||||| | || | || ||| | | | ||||| || || Sbjct 3512 CACCGCCATGGATGTCGTTTATGCTCTCAAGAGGCAGGGCAGGACTCTCTATGGCTTCGG 3571 Query 16693 AAGTTAA 16699 | ||||| Sbjct 3572 AGGTTAA 3578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79034546253552