Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq42527 152 6e-32 seq36964 152 6e-32 seq32367 141 1e-28 seq1704 129 7e-25 seq35886 116 5e-21 seq37024 91.5 2e-13 seq37232 89.7 6e-13 >seq42527 Length=94160 Score = 152 bits (168), Expect = 6e-32 Identities = 402/611 (66%), Gaps = 2/611 (0%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || |||||||||||||| || |||||||| | ||| || |||||||||| Sbjct 58002 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAA 57943 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 ||||||| || ||||| || || || || || ||||| || |||| ||| || | Sbjct 57942 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATGGCGCAGAAGCTCCCGG 57883 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33475 | |||||||| ||||| || || || || | || | ||| | | | || || Sbjct 57882 AGAAGAAGATCCCTTCCACACAGGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGGTGG 57823 Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535 | | ||||| || ||||| ||||| ||||| || || || || || ||||| | || Sbjct 57822 CGTCGATCCATTTCAACGCCCACTCGGCTTTCTTCTTGACGCAGGGGATGGTTTCCACGG 57763 Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 | ||||| | | ||||||| || || | || || || | || || || | Sbjct 57762 CGCGGAAGAGGTTGGATTTTTCAGCGGAGTCCTTGATGTAGGTTTCTAACAGGAGGCTGT 57703 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 |||| || || || ||||| || || || ||||| || | |||||| | ||||||| Sbjct 57702 ACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCTGTAGAAGGCGCGTGCCTCGG 57643 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTG 33714 || ||||| | || | | |||| || | |||||| ||||| ||||| | Sbjct 57642 CGGATTGGACTTC-CTTCATGAACCTTCCGGCGAGATTTTCGAGGACTATCCCGTCGGAG 57584 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33774 || || || || || | || || | || || | |||| | || || | | Sbjct 57583 GCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCGGTGAGGGAGTCC 57524 Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 || | || ||| |||| ||| || || ||| | ||||| || ||||| || || Sbjct 57523 CAGTGGCGGAGATCGGACGATAGATCAACCTCCTCCGCCGTCCAGAACGATGCTTCGGCT 57464 Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894 || || ||||| | ||| || | |||||||||||||| || |||| || ||| Sbjct 57463 TTCTTGTACATTTCCCAAATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGG 57404 Query 33895 TTTGGTGCAAG 33905 ||||| ||||| Sbjct 57403 TTTGGAGCAAG 57393 >seq36964 Length=242943 Score = 152 bits (168), Expect = 6e-32 Identities = 402/611 (66%), Gaps = 2/611 (0%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || |||||||||||||| || |||||||| | ||| || |||||||||| Sbjct 59785 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAA 59726 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 ||||||| || ||||| || || || || || ||||| || |||| ||| || | Sbjct 59725 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATGGCGCAGAAGCTCCCGG 59666 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33475 | |||||||| ||||| || || || || | || | ||| | | | || || Sbjct 59665 AGAAGAAGATCCCTTCCACACAGGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGGTGG 59606 Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535 | | ||||| || ||||| ||||| ||||| || || || || || ||||| | || Sbjct 59605 CGTCGATCCATTTCAACGCCCACTCGGCTTTCTTCTTGACGCAGGGGATGGTTTCCACGG 59546 Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 | ||||| | | ||||||| || || | || || || | || || || | Sbjct 59545 CGCGGAAGAGGTTGGATTTTTCAGCGGAGTCCTTGATGTAGGTTTCTAACAGGAGGCTGT 59486 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 |||| || || || ||||| || || || ||||| || | |||||| | ||||||| Sbjct 59485 ACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCTGTAGAAGGCGCGTGCCTCGG 59426 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTG 33714 || ||||| | || | | |||| || | |||||| ||||| ||||| | Sbjct 59425 CGGATTGGACTTC-CTTCATGAACCTTCCGGCGAGATTTTCGAGGACTATCCCGTCGGAG 59367 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33774 || || || || || | || || | || || | |||| | || || | | Sbjct 59366 GCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCGGTGAGGGAGTCC 59307 Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 || | || ||| |||| ||| || || ||| | ||||| || ||||| || || Sbjct 59306 CAGTGGCGGAGATCGGACGATAGATCAACCTCCTCCGCCGTCCAGAACGATGCTTCGGCT 59247 Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894 || || ||||| | ||| || | |||||||||||||| || |||| || ||| Sbjct 59246 TTCTTGTACATTTCCCAAATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGG 59187 Query 33895 TTTGGTGCAAG 33905 ||||| ||||| Sbjct 59186 TTTGGAGCAAG 59176 >seq32367 Length=12065 Score = 141 bits (156), Expect = 1e-28 Identities = 242/349 (69%), Gaps = 3/349 (1%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 |||||| ||| ||||| |||||||| || |||||||| | || || |||||||| | Sbjct 2391 ACATCAGACACGCGAAGTCGCAGTGGAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGA 2450 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || || || ||||| ||||| ||||| || ||||| || |||| ||| || | Sbjct 2451 ATGTTAGCCCCGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGCGCAGAAGCTCCCGG 2510 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC-TCTCTCCATAACCGGCGCTG 33474 | |||||||||||||| || || || || | ||| | | | | | | | ||| Sbjct 2511 AGAAGAAGATTCCTTCCACACACGCGAACGCGACAAGCCGTTCCGCGAAGAAAGTATCTG 2570 Query 33475 TC--ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 || || ||||| || | ||||| ||||| ||||| |||| ||||| | ||||| | Sbjct 2571 TCGAGTGGATCCATTTCAGGGCCCACTCGGCTTTCTTCCTTACGCAAGGAACAGTTTCGA 2630 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 | ||| ||||| | | || || || |||| || || || | | | || Sbjct 2631 TTGCACGGAAGAGTCTGCTCTTCTCCGCGGAGTCCTTAATGTAGGTTTCTAAGAGCAAAC 2690 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641 | ||||||||||| || ||||| |||||||| ||||| ||||||||||| Sbjct 2691 TGTACATTTCCGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAA 2739 >seq1704 Length=114806 Score = 129 bits (142), Expect = 7e-25 Identities = 406/618 (66%), Gaps = 12/618 (2%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || |||||||||||||| || |||||||| | || || |||||||| | Sbjct 97654 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGA 97595 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 ||||||| || ||||| || || || ||||| | ||| || || | ||| || | Sbjct 97594 ACGTGAGCCCCGGCATGAGACCGCGTTTTTTCAACCAGAAGATCGCGCAGAAGCTCCCGG 97535 Query 33416 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCG---GCG 33471 | |||||||| ||||| || ||| || ||||||| | | | |||| | | || Sbjct 97534 AGAAGAAGATCCCTTCCAC-GCAGGCGAAGGCAACCA--CCCGCTCCGCGAAGGAATCCG 97478 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 || | | ||||| || ||||| ||||| ||||| || || || || ||||| Sbjct 97477 ATG-CGTCGATCCATTTCATCGCCCACTCGGCTTTCTTCGCGACGCAGGGGATGGTTTCG 97419 Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 | ||| | ||||| || ||| || | || || | || || || | || || Sbjct 97418 ACGGCGTGGAAGAGGCGGTGTTTCTCGGTGGAGTCCTTGATGTAGGTTTCTAACAGGAGG 97359 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 || ||||| || || || ||||| || ||||| ||||| || |||||||| | || Sbjct 97358 CTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGTGCT 97299 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTC 33710 |||| || || |||||| | || | | |||| || | |||||| || || ||||| Sbjct 97298 TCGGCGATTTGGACTTCT-TTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCGTC 97240 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTT 33769 ||| || || || || | || || | || || | |||| | | || | || Sbjct 97239 GGAGGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCGT-TGAGGG 97181 Query 33770 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 33829 | ||| || || || | || | || |||||||| | ||||| || || || Sbjct 97180 AGTCCCAGTCGCGGAGGTCGTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAGGAGGCGA 97121 Query 33830 CTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTAT 33889 || || || ||||| | |||||| || |||||||||||||| || || | | Sbjct 97120 GGGCTTTCTTGTACATTTGCCAGATTTCGGGGTATTGGATTGGGAACATGCAGAAGCGGT 97061 Query 33890 TTGGATTTGGTGCAAGGA 33907 ||| || |||||||||| Sbjct 97060 CTGGGTTGGGTGCAAGGA 97043 >seq35886 Length=22054 Score = 116 bits (128), Expect = 5e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | || |||||||| || || |||||| ||||||| | | || | Sbjct 12060 GTTCCTGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTCAGACAACAAATGG 12119 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | | ||| || || ||||| | ||| |||||||| || || || | ||| || Sbjct 12120 TAGGTTTTGACAGCCGATTCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 12178 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| ||||| || | ||| | || ||||| | ||||||| | || | Sbjct 12179 CATGTGCTGAGGCCTTTCCACAACCTTTCCTTGTACCTTCAAGAGGTAGGATCTCTCAAG 12238 Query 63791 AGTTTTAAAACCAAAATA 63808 ||||| ||||||||||| Sbjct 12239 GGTTTTGAAACCAAAATA 12256 >seq37024 Length=156878 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || |||||||||||||| || |||||||| | || || |||||||| | Sbjct 305 ACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGA 246 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 ||||||| || ||||| || || || ||||| | ||| || || | ||| || | Sbjct 245 ACGTGAGCCCCGGCATGAGACCGCGTTTTTTCAACCAGAAGATCGCGCAGAAGCTCCCGG 186 Query 33416 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAA 33448 | |||||||| ||||| || ||| || ||||||| Sbjct 185 AGAAGAAGATCCCTTCCAC-GCAGGCGAAGGCAA 153 >seq37232 Length=10575 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| |||||| || ||||| ||||| || |||||||| | ||| | |||||||||| Sbjct 7166 ACAACAAACAAGCAAAATCACAGTGAAGCCCCTCGTCACGTGAAATCAACTCGTTGGAAA 7107 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 ||||||| || ||||| || || || || || ||||| || || | | ||| || | Sbjct 7106 ACGTGAGCCCCGGCATGAGACCGCGTTTCTTCAGCCAGAAAATCGCACAGAAGCTCCCGG 7047 Query 33416 AAAAGAAGATTCCTTCTAC 33434 | |||||||| ||||| || Sbjct 7046 AGAAGAAGATCCCTTCCAC 7028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622600965946240