Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq42083 111 4e-19 seq32367 93.3 1e-13 seq35886 91.5 4e-13 seq40684 87.8 5e-12 seq36855 87.8 5e-12 seq32581 87.8 5e-12 >seq42083 Length=66024 Score = 111 bits (122), Expect = 4e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||| || ||||| || ||| || ||||| || | ||| || | ||| | Sbjct 46034 TTGCTTCCTTATATGCATGAAAGATGATAGTATAGAGGGGATTTATGATACTTTGAAGGA 46093 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| | ||| ||| ||||| ||||||||||| || | ||||| ||||||| Sbjct 46094 GTGTGCTGTCATTAGCAAATCGGCAGGAGGAATTGGTGTTTCTGTTCACAACATTCGTGC 46153 Query 363726 ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 | ||||||||||||||| || | |||| || ||||| | ||||||||||| | Sbjct 46154 CATGGGCAGTTACATTCGCGGAACTAATGGGA-CTTCCAATGGTGTTGTTCCCATGCTGC 46212 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 | ||||| | ||||||| | || || || || || ||||| ||| | ||||| Sbjct 46213 GCGTGTTCAATGATACTGCTCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAAGG 46267 >seq32367 Length=12065 Score = 93.3 bits (102), Expect = 1e-13 Identities = 156/217 (72%), Gaps = 9/217 (4%) Strand=Plus/Minus Query 22437 GAATAAGGCAGATTGGGCGCTGAAATGGATGAAC---AATGA-ACGTTCATTCGCGGAAC 22492 ||| || || || ||||| ||||||||||| || | || || ||| |||||||||| Sbjct 2608 GAAGAAAGCCGAGTGGGCCCTGAAATGGATCCACTCGACAGATACTTTC-TTCGCGGAAC 2550 Query 22493 GTCTTATTGCATTTGC-TGTGGTTGAAGGCATTTTCTT-TTCTGGAGCATTTTGTGCAAT 22550 | ||| | || || || ||| || ||||| || ||||| | | ||||| || || || || Sbjct 2549 GGCTTGTCGCGTTCGCGTGT-GTGGAAGGAATCTTCTTCTCCGGGAGC-TTCTGCGCCAT 2492 Query 22551 CTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAG 22610 ||| ||||| || || || | | |||||||| ||||| || || || ||| | || Sbjct 2491 CTTCTGGCTGAAGAAGCGCGGCCTCATGCCGGGGCTAACATTCTCCAACGAGCTGATCTC 2432 Query 22611 CCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATG 22647 ||| || ||||| || || ||| || |||||| || Sbjct 2431 CCGTGACGAGGGGCTCCACTGCGACTTCGCGTGTCTG 2395 >seq35886 Length=22054 Score = 91.5 bits (100), Expect = 4e-13 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 ||||||||| | ||| | || ||| || |||||||| | ||| || | ||| | Sbjct 11917 TTGCTTTCTAGTGTGCATGCAAGATGATAGTATAGAGGGTATATATGAGACTTTGAAGGA 11858 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| | || || || || ||||||||||| || | ||||| ||||||| Sbjct 11857 GTGTGCTGTCATCAGTAAATCAGCTGGAGGAATTGGTGTCTCTGTTCACAACATTCGTGC 11798 Query 363726 -ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 |||| | ||||||||| | || || | |||| | || ||||| | || |||||| | Sbjct 11797 AACAGGA-AGTTACATTGGTGGGACTAATGGGACA-TCCAATGGAATCGTCCCCATGTTG 11740 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 || ||||| | |||||||| | || || ||||| || ||||| ||| | ||||| Sbjct 11739 CGCGTGTTCAATAATACTGCCCGCTATGTTGACCAAGGGGGAGGCAAGAGGAAAGG 11684 >seq40684 Length=51770 Score = 87.8 bits (96), Expect = 5e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| |||||| | ||| | | ||||| |||||||||||||||||||| ||||| Sbjct 20136 CAGTTCTATGTAGCAAATGGGGAGTTGTCATGTCAAATGTATCAGCGATCTGCGGATATG 20077 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || || || || || |||||||||||| ||| || || | || ||| | || |||||| Sbjct 20076 GGCCTGGGCGTGCCATTTAATATTGCATCTTATGCGCTCTTGACATGCATGATTGCTCAT 20017 Query 111822 TTT 111824 || Sbjct 20016 GTT 20014 >seq36855 Length=144149 Score = 87.8 bits (96), Expect = 5e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 ||||| ||||||||||||||||||||||| || || || || || || |||||||||||| Sbjct 115685 TCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTGCCATTTAATATTGCA 115744 Query 111789 AGTTACGCACTACTTACTTGCTTAATCGCTCATTTT 111824 ||| || || || || ||| | || |||||| || Sbjct 115745 TCTTATGCGCTCCTGACATGCATGATTGCTCATGTT 115780 >seq32581 Length=13587 Score = 87.8 bits (96), Expect = 5e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 ||||| ||||||||||||||||||||||| || || || || || || |||||||||||| Sbjct 886 TCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTGCCATTTAATATTGCA 945 Query 111789 AGTTACGCACTACTTACTTGCTTAATCGCTCATTTT 111824 ||| || || || || ||| | || |||||| || Sbjct 946 TCTTATGCGCTCCTGACATGCATGATTGCTCATGTT 981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302611085970848