Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq32376 111 1e-19 seq41040 89.7 4e-13 seq7383 87.8 2e-12 >seq32376 Length=6472 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| ||| | || ||| | || ||||| || Sbjct 767 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAAACCATCACCCTTGAGGTCGAATCCTCA 708 Query 24051 GACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | || || || ||| ||| |||||||| || || ||||| ||||| Sbjct 707 GATACCATTGACAATGTGAAGACGAAA-ATTCAGGACAAAGAGGGTATCCCTCCAGATCA 649 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||| || |||| | || || ||||| ||||||| || | | | ||||| || Sbjct 648 ACAGAGGCTTATTTTTGCTGGGAAACAACTTGAAGATGGAAGGACCTTGGCTGATTACAA 589 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || || ||||| ||||||| ||| | |||||||||| || Sbjct 588 CATCCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGATTGAGAGGTGG 541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA--GGCCA 24048 |||||| | ||||| || || || || ||||| | ||||| | || || || | || Sbjct 311 ATGCAAATTTTTGTCAAGACCTTGACAGGAAAGACAATTACTTTGGAGGTGGAAAGTTCA 252 Query 24049 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 || || || || | || ||| ||||||| || || || ||||| || || |||| Sbjct 251 --GATACTATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGGCATCCCGCCAGATC 194 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | ||||| || || | | ||| ||||| || ||||||| |||| | ||||||| Sbjct 193 AGCAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAAGATGGTAGAACTCTTGCTGATTATA 134 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||| || || ||||| | ||||| || || Sbjct 133 ACATTCAGAAGGAGTCTACTTTGCATTTGGTCTT 100 >seq41040 Length=490441 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | |||||||| | || ||| | || || ||| Sbjct 167298 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGTTCT 167239 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || || ||| |||||||||||||| || || || ||| Sbjct 167238 GACACCATCGACAATGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAA 167179 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | ||||| || || || |||| ||| ||| | || ||||| || Sbjct 167178 CAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAG-AACTTTGGCTGATTACAA 167120 Query 24170 CATTCAAAAAGAATCTAC 24187 |||||| ||||| || || Sbjct 167119 CATTCAGAAAGAGTCCAC 167102 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | |||||||| | || ||| | || || ||| Sbjct 178516 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCT 178457 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || || ||| |||||||||||||| || || || ||| Sbjct 178456 GACACCATCGACAACGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAA 178397 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | ||||| || || || |||| ||| ||| | || ||||| || Sbjct 178396 CAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAG-AACTTTGGCTGATTACAA 178338 Query 24170 CATTCAAAAAGAATCTAC 24187 |||||| ||||| || || Sbjct 178337 CATTCAGAAAGAGTCCAC 178320 >seq7383 Length=6982 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/143 (74%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| |||||||| ||||| ||||| || || |||||| | ||| ||||| || ||| Sbjct 806 GACAAGGAAGGCATCCCTCCGGATCAGCAAAGGTTGATTTTTGCCGGTAAGCAGCTGGAA 865 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| | | | | ||||||||||| ||||| ||||| || ||||||| || || Sbjct 866 GATGGCCGCACTCTTGCTGATTATAACATACAAAAGGAATCGACTCTTCATTTGGTCTTG 925 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || | || ||||| ||||| || Sbjct 926 AGGCTCAGGGGAGGAACTATGAT 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429703015531920