Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq41040 116 3e-21 seq32376 107 2e-18 seq14423 105 6e-18 seq39663 104 2e-17 seq40108 95.1 1e-14 seq14855 86.0 5e-12 >seq41040 Length=490441 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || ||||| ||||| || || ||| | || |||| Sbjct 178972 ATGCAAATCTTTGTCAAGACCCTCACAGGAAAGACAATCACCCTTGAGGTGGAGAGTTCT 178913 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || |||||| || || || || | ||| ||||| Sbjct 178912 GACACCATTG-ACAATGTGAAGGCCAAAATTCAAGACAAGGAGGGTATTCCCCCAGATCA 178854 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| ||||||| |||||||||||| | || |||| | ||| |||| |||||||| Sbjct 178853 GCAAAGGCTTATTTTCGCGGGCAAACAACTTGAGGATGGCCGAACTCTGGCAGATTATAA 178794 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| || |||||||| ||| | || | |||||| || | || || || Sbjct 178793 CATCCAGAAAGAGTCAACTCTCCACCTTGTGTTGCGACTCCGTGGTGG 178746 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || ||||| ||||| ||||| ||| | || |||| | Sbjct 167981 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 167922 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || || |||||| || ||||| ||| |||| || || Sbjct 167921 GACACAATT-GACAATGTGAAGGCCAAAATTCAAGACAAAGAGGGCATCCCACCAGACCA 167863 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || || || || | ||| || ||||| | ||||||| || |||| ||||||| || || Sbjct 167862 ACAGAGGCTCATCTTTGCTGGTAAACAGCTTGAAGATGGCAGAACCTTGGCCGACTACAA 167803 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| |||||||| || |||| ||||| Sbjct 167802 CATTCGGAAAGAGTCCACCCTACACTTGGTG 167772 Score = 102 bits (112), Expect = 7e-17 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || |||| ||||| || || ||| | || |||| Sbjct 167753 ATGCAAATCTTTGTCAAGACCCTCATAGGAAAGACAATCACCCTTGAGGTGGAGAGTTCT 167694 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || |||||| || || || || | ||| ||||| Sbjct 167693 GACACCATTG-ACAACGTGAAGGCCAAAATTCAAGACAAGGAGGGTATTCCCCCAGATCA 167635 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| ||||||| || |||||||| | || |||| | ||| |||| |||||||| Sbjct 167634 GCAAAGGCTTATTTTCGCTGGCAAACAGCTTGAGGATGGCCGAACTCTGGCAGATTATAA 167575 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGG 115509 ||| || |||||||| ||| | || | |||||| || | || || Sbjct 167574 CATCCAGAAAGAGTCAACTCTCCACCTTGTGTTGCGACTCCGTGG 167530 >seq32376 Length=6472 Score = 107 bits (118), Expect = 2e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 ||||||||||||||||| || | || ||||| || ||||| | || ||| || || Sbjct 311 ATGCAAATTTTTGTCAAGACCTTGACAGGAAAGACAATTACTTTGGAGGTGGAAAGTTCA 252 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | | ||| ||| | || ||| ||| ||| ||||| || ||| |||| |||| Sbjct 251 G--ATACTATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGGCATCCCGCCAGATC 194 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || ||||| | ||| || || || | ||||||| | ||| | || ||||||| Sbjct 193 AGCAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAAGATGGTAGAACTCTTGCTGATTATA 134 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||||||| || ||||||||| | ||| |||| ||| Sbjct 133 ACATTCAGAAGGAGTCTACTTTGCATTTGGTCTTG 99 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||||||||| || | || ||||| || || || | || || | Sbjct 539 ATGCAAATTTTTGTCAAGACCTTGACAGGAAAGACAATAACTTTGGAGGTTGAAAGCTCA 480 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | || ||| || ||| || || || ||| |||| |||||| Sbjct 479 GATACTATTGATAATGTGAAATCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGATCAG 420 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || ||||||| ||| || |||||| | ||||||| | ||| |||| ||||| ||| Sbjct 419 CAGAGGCTTATTTTTGCTGGGAAACAACTTGAAGATGGAAGGACCTTGGCTGATTACAAC 360 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || ||||| || ||||| ||||| || || || |||| || Sbjct 359 ATCCAGAAGGAGTCCACCCTACATTTGGTGCTGCGACTGAGAGGTGG 313 >seq14423 Length=23748 Score = 105 bits (116), Expect = 6e-18 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 ||||| |||||||| ||||| ||||| || || ||||||||| | || ||| || || Sbjct 11410 ATGCAGATTTTTGTGAAAACTCTCACCGGCAAGACCATTACCCTTGAGGTGGAAAGTTCA 11469 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | | || ||| |||| || ||| ||||| || || ||||| |||| |||| Sbjct 11470 G--ATACCATTG-ACAATGTTAAAGCGAAAATCCAAGACAAGGAAGGGATCCCACCTGAT 11526 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||||| ||||| | ||| || || ||||| || |||| ||| | || ||||| Sbjct 11527 CAGCAAAGGCTTATCTTTGCTGGTAAGCAATTGGAGGATGGTCGCACCCTTGCTGATTAC 11586 Query 115463 AACATTCAAAAAGAGTCTAC 115482 ||||||||||| |||||||| Sbjct 11587 AACATTCAAAAGGAGTCTAC 11606 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||||||||| || | || ||||| ||||| || | || |||| | Sbjct 12094 ATGCAAATTTTTGTCAAGACCTTGACAGGAAAGACCATAACTTTGGAGGTGGAGAGCTCA 12153 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || ||| || ||| ||||| || ||| |||| || ||| Sbjct 12154 GATACCATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAGGGCATCCCACCAGACCAG 12213 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || ||||| | ||| || ||||| | ||||||| | |||| | || ||||| ||| Sbjct 12214 CAGAGGCTTATATTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCTGATTACAAC 12273 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||||| || ||||||||| | ||| |||| ||| Sbjct 12274 ATTCAGAAGGAGTCTACTCTGCATTTGGTCTTG 12306 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||||||||| || | || || |||||||| ||| |||| || ||| Sbjct 11866 ATGCAAATTTTTGTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTTGAATCCTCG 11925 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || || || || |||||||| ||| |||| || || Sbjct 11926 GACACCATT-GACAATGTCAAGGCGAAGATCCAGGATAAAGAGGGCATCCCTCCAGACCA 11984 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || ||||||| ||| || ||||| | || |||| | ||| | || ||||| || Sbjct 11985 GCAGAGGCTTATTTTTGCCGGGAAACAGCTTGAGGATGGAAGGACCCTAGCTGATTACAA 12044 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || ||||| || | || ||||| | ||||| |||| || Sbjct 12045 TATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGATTGAGAGGTGG 12092 >seq39663 Length=443811 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || |||||||| || | ||||| ||||| || ||| |||| ||| ||| Sbjct 345484 ATGCAGATCTTTGTCAAGACATTGACGGGTAAAACAATCACCCTCGAGGTGGAATCCTCA 345425 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || || || ||||| ||| |||| |||||| Sbjct 345424 GACACCATTGATAATGTGAAGGCGAAGATCCAGGACAAAGAGGGCATCCCACCAGATCAG 345365 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||| || |||| ||| || |||||| | || |||| | ||| | |||||||| ||| Sbjct 345364 CAAAGGCTGATTTTTGCTGGTAAACAACTCGAGGATGGAAGGACCCTCGCCGATTACAAC 345305 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || ||||| || | ||| |||| || ||||| |||| || Sbjct 345304 ATCCAGAAGGAGTCCACCCTTCATTTGGTTCTGCGATTGAGAGGCGG 345258 >seq40108 Length=192235 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || | || ||||| || || || | || ||| | Sbjct 160547 ATGCAAATTTTTGTGAAGACCTTGACAGGAAAGACAATAACGTTGGAGGTGGAAAGCTCA 160606 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | || ||| || ||| || || || ||| |||| || ||| Sbjct 160607 GATACTATTGATAATGTGAAAGCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 160666 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||| || ||||| | ||||||| | |||| | || ||||||||| Sbjct 160667 CAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGAAGAACCCTTGCTGATTATAAC 160726 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| || ||||||||| | ||| |||||||| | | || ||||| Sbjct 160727 ATTCAGAAGGAGTCTACTCTGCATTTGGTGTTGCGGCTTCGTGGAGG 160773 >seq14855 Length=14869 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || | ||||| || ||||| || | || ||| Sbjct 12551 ATGCAAATTTTTGTGAAGACATTGACGGGGAAGACCATAACTCTGGAGGTTGAGAGTTCT 12492 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| |||| || ||| || ||| ||||| ||||| |||| ||||| Sbjct 12491 GATACAATTG-ACAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATCCCTCCGGATCA 12433 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| |||||||| | ||| || || || || ||||||| | |||| | | |||||||| Sbjct 12432 GCAGAGACTTATCTTTGCTGGGAAGCAGTTGGAAGATGGAAGAACCCTTTCAGATTATAA 12373 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||| || || |||||||| | || |||| ||| Sbjct 12372 CATCCAGAAGGAGTCTACACTGCACTTGGTTTTG 12339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425113503959680