Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq41040 136 3e-27 seq14423 127 2e-24 seq32376 125 6e-24 seq40108 116 3e-21 seq39663 114 1e-20 seq14855 107 2e-18 seq43196 104 2e-17 seq7383 87.8 2e-12 >seq41040 Length=490441 Score = 136 bits (150), Expect = 3e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || ||||||| | || |||||| ||| Sbjct 178516 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCT 178457 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| | |||| ||| ||||||||||| |||||||| ||||| Sbjct 178456 GACACCATCGACAACGTGAAGGCTAAAATTCAA-GACAAAGAAGGCATTCCACCAGACCA 178398 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || ||||| |||||||| | || |||| | ||| ||| |||||||| Sbjct 178397 ACAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAA 178338 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| ||||| ||||| || || Sbjct 178337 CATTCAGAAAGAGTCCACCCTCCA 178314 Score = 131 bits (144), Expect = 1e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || | ||||| | || |||||| ||| Sbjct 167298 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGTTCT 167239 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| | |||| ||| ||||||||||| |||||||| ||||| Sbjct 167238 GACACCATCGACAATGTGAAGGCTAAAATTCAA-GACAAAGAAGGCATTCCACCAGACCA 167180 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || ||||| |||||||| | || |||| | ||| ||| |||||||| Sbjct 167179 ACAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAA 167120 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| ||||| ||||| || || Sbjct 167119 CATTCAGAAAGAGTCCACCCTCCA 167096 >seq14423 Length=23748 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| |||||||| ||||| ||||||| || | || || | || ||||| || Sbjct 12549 AATGCAGATATTTGTGAAGACCCTGACCGGAAAGACTATTACCTTGGAGGTGGAAAGCTC 12608 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||| || |||| || ||| ||||| || || ||||| || ||||| Sbjct 12609 TGATACTATTGATAATGTGAAAGCGAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCA 12668 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | |||||||| ||||| ||||| || |||| || ||| ||| |||||||| Sbjct 12669 ACAGCGATTGATTTTTGCTGGCAAGCAATTGGAGGATGGCCGTACTTTGGCAGATTACAA 12728 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || |||||||| || ||| | || || Sbjct 12729 TATTCAGAAGGAATCCACCCTGCATCTTGTCCT 12761 Score = 120 bits (132), Expect = 3e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || ||| ||||||| |||| || || || || Sbjct 11866 ATGCAAATTTTTGTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTTGAATCCTCG 11925 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || ||| || ||||| || || || || |||| Sbjct 11926 GACACCATTGA--CAATGTCAAGGCGAAGATCCAGGATAAAGAGGGCATCCCTCCAGACC 11983 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || ||||||||||||| ||||| | || |||| | || | | ||||||| Sbjct 11984 AGCAGAGGCTTATTTTTGCCGGGAAACAGCTTGAGGATGGAAGGACCCTAGCTGATTACA 12043 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || || || ||||| || || || ||||| Sbjct 12044 ATATCCAGAAGGAGTCCACCCTTCACTTGGTGCT 12077 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || ||| ||||||| | || || ||||| || Sbjct 11638 ATGCAGATCTTTGTTAAGACTTTGACTGGGAAAACCATCACCCTTGAGGTTGAGTCCTCG 11697 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || ||| || ||||| || || || || || | Sbjct 11698 GACACCATTGA--CAATGTCAAGGCGAAGATCCAGGATAAAGAGGGCATCCCTCCAGATC 11755 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | |||||||| || |||||| | || |||| | || | | ||||||| Sbjct 11756 AGCAGAGGTTGATTTTTGCTGGGAAACAACTTGAGGATGGAAGGACCCTAGCTGATTACA 11815 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || ||||| || ||||| ||||| Sbjct 11816 ACATCCAGAAGGAGTCCACCCTTCATTTGGTGCT 11849 >seq32376 Length=6472 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || ||| ||||||| | || || || || || Sbjct 767 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAAACCATCACCCTTGAGGTCGAATCCTCA 708 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | |||| ||| |||||||| || || || || || || Sbjct 707 GATACCATTGACAATGTGAAGACGAAAATTCA-GGACAAAGAGGGTATCCCTCCAGATCA 649 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || |||||||||| || |||||| | ||||||| | || ||| |||||||| Sbjct 648 ACAGAGGCTTATTTTTGCTGGGAAACAACTTGAAGATGGAAGGACCTTGGCTGATTACAA 589 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||||| ||||| Sbjct 588 CATCCAGAAGGAGTCTACCCTTCATTTGGTGCT 556 >seq40108 Length=192235 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| || || || || |||| || | || ||||| ||| Sbjct 160775 ATGCAAATTTTTGTCAAGACCTTAACAGGAAAGACCATTACCTTAGAGGTGGAAAGCTCT 160834 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || |||| ||| ||| ||||| || || ||||| || ||||| Sbjct 160835 GATACGATTGATAATGTGAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 160894 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| ||||||| || || || || || ||||||| || || ||| ||||||||| Sbjct 160895 CAGCGACTTATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACACTGGCAGATTACAAT 160954 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| |||||||| || ||| | || || Sbjct 160955 ATTCAAAAGGAATCCACTCTGCATCTTGTCCT 160986 >seq39663 Length=443811 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||||| ||||| || |||| ||| | || || ||| ||| Sbjct 345028 ATGCAAATCTTTGTTAAGACTTTAACCGGGAAGACCATAACATTGGAGGTTGAGAGTTCT 344969 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || |||| || || | ||| || || || || |||||||| ||||| Sbjct 344968 GATACTATTGATAATGTGAAAGCTAAGATTCAG-GATAAGGAGGGTATTCCACCAGACCA 344910 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| ||||| || || || | ||||||| | | || ||| |||||||| Sbjct 344909 GCAGAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGTAGGACCCTGGCTGATTACAA 344850 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| || || || ||||| || || || || Sbjct 344849 TATCCAGAAGGAGTCCACCCTGCACTTGGT 344820 >seq14855 Length=14869 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || ||| ||||||| |||| || || || || Sbjct 13235 ATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTTGAATCCTCA 13176 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| || ||| |||||||| || ||||| || || || Sbjct 13175 GACACTATCGATAATGTCAAGGCGAAGATCCAAGACAAAGAGGGTATTCCTCCGGATCAG 13116 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| || || || | || |||| | || | | |||||||| Sbjct 13115 CAAAGGTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACCCTTGCTGATTACAAC 13056 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || || ||||| ||||| Sbjct 13055 ATCCAGAAGGAATCTACCCTTCATTTGGTGCT 13024 >seq43196 Length=72091 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| ||||| ||||||| | || |||||| ||| Sbjct 32520 ATGCAGATTTTCGTGAAGACTTTGACTGGTAAGACCATCACTCTTGAGGTGGAGAGCTCT 32461 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| || || || || ||||| || || || Sbjct 32460 GACACCATTGACAACGTGAAGGCTAAGATCCAGGATAAGGAGGGTATTCCCCCGGATCAG 32401 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | |||||||| || || || | || |||| | ||| | | |||||||| Sbjct 32400 CAGAGGTTGATTTTTGCTGGTAAGCAGCTCGAGGATGGAAGGACTCTTGCGGATTACAAC 32341 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| | ||||| | || || ||||| Sbjct 32340 ATCCAGAAGGAGTCCACCCTTCATCTTGTGCTGCGTCTCAGGGGAGG 32294 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || || ||| ||| Sbjct 32748 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGAGCTCT 32689 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 32688 GACACCATCGACAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCCCCGGACCAG 32629 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | || |||| |||||| | | || ||||| Sbjct 32628 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACCCTTGCTGACTACAAC 32569 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||| || || || | || || | || || ||||| Sbjct 32568 ATCCAGAAGGAATCTACCCTTCACCTTGTCCTTCGTCTGAGGGGAGG 32522 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| |||| || || ||| Sbjct 32976 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAAAGCTCT 32917 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| ||||| || || ||||| || || || Sbjct 32916 GACACTATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCGGATCAG 32857 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || |||||||| || | || |||| |||||| ||| ||| ||||| Sbjct 32856 CAGAGGTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACCTTGGCCGACTACAAC 32797 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 32796 ATCCAGAAGGAGTCTACCCTCCA 32774 >seq7383 Length=6982 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| || || || || || || || | ||||||||||| || || | ||| Sbjct 806 GACAAGGAAGGCATCCCTCCGGATCAGCAAAGGTTGATTTTTGCCGGTAAGCAGCTGGAA 865 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| |||||| | | ||||| || || ||||| ||||| || || ||||| || | Sbjct 866 GATGGCCGCACTCTTGCTGATTATAACATACAAAAGGAATCGACTCTTCATTTGGTCTTG 925 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| || ||||||| Sbjct 926 AGGCTCAGGGGAGGAA 941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433093177390160