Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1704 129 7e-25 seq39823 93.3 5e-14 seq37232 91.5 2e-13 seq39031 89.7 6e-13 seq35811 89.7 6e-13 seq35664 89.7 6e-13 seq32367 89.7 6e-13 seq27310 89.7 6e-13 seq40964 84.2 2e-11 seq36504 84.2 2e-11 seq43196 82.4 8e-11 seq42597 82.4 8e-11 seq40516 82.4 8e-11 >seq1704 Length=114806 Score = 129 bits (142), Expect = 7e-25 Identities = 390/595 (66%), Gaps = 17/595 (3%) Strand=Plus/Minus Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 |||| |||||||| || ||| || | || ||||| ||||| |||| ||| ||| | Sbjct 97655 TACAACAAGCACGCGAAATCGCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAG 97596 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACC 93201 || || | || || | || || ||||| || | ||| || || | ||| || || || Sbjct 97595 AACGTGAGCCCCGGCATGAGACCGCGTTTTTTCAACCAGAAGATCGC-GCAGAAGCTCCC 97537 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || || || || ||||||||| || || || || | || || || || ||| Sbjct 97536 GGAGAAGAAGATCCCTTCCACGCAGGCGAAGGCAACCACCCGCTCCGCGAA------GGA 97483 Query 93262 ATTAC-TGCT--GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 || ||| ||||||||| | ||||| |||||||| ||| | || || | || Sbjct 97482 ATCCGATGCGTCGATCCATTTCATCGCCCACTCGGCTTTCTTCGCGACGCAGGGGATGGT 97423 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 ||||| |||| || ||| | | |||| || || ||||| || || ||| Sbjct 97422 TTCGACGGCGTGGAAGAGGCGGTGTTTCTCGGTGGAGTCCTTGATGTAGGTTTC---TAA 97366 Query 93379 CAG-AGAAT--ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 ||| || | |||| || || |||| ||||| || || || ||||| |||||||| Sbjct 97365 CAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGC 97306 Query 93436 TCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTAT 93495 | ||||| | ||| || ||||||| || || | |||||||||| ||| || Sbjct 97305 GCGTGCTTCGGCGATTTGGACTTCTTTCATGAACCTTCCGGCGAGATTTTCGAGGACGAT 97246 Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT 93555 || ||||| || || || || || | | || | || || || || | || || Sbjct 97245 GCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCGTT 97186 Query 93556 AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 || ||||| ||| || || | || || |||||||||||| | ||||| || || Sbjct 97185 GAGGGAGTCCCAGTCGCGGAGGTCGTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAGGA 97126 Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 || ||||| |||||||| | ||| || || | ||||| ||||| || ||| Sbjct 97125 GGCGAGGGCTTTCTTGTACATTTGCCAGATTTCGGGGTATTGGATTGGGAACATG 97071 >seq39823 Length=20359 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/98 (82%), Gaps = 6/98 (6%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 10139 ACAGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGA 10196 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAAATTATTAT 126356 |||||||||| || ||||| |||||| ||| ||| Sbjct 10197 GGGCGTGGGTTCAAATCCCACTTCTGACATTTTAGTAT 10234 >seq37232 Length=10575 Score = 91.5 bits (100), Expect = 2e-13 Identities = 245/375 (65%), Gaps = 0/375 (0%) Strand=Plus/Minus Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 ||||||||| || ||||| || ||||| ||||| | || || | || |||| ||| Sbjct 7022 GATCCATTTCAACGCCCAGTCCGCTTTCTTCTTGACGCAGGGGATGGTGTCGACGGCGCG 6963 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 || |||| | |||| | || || ||||| || || | || || ||||| Sbjct 6962 GAAGAGGTTGGATTTCTCGGCGGAGTCCTTGATGTAGGTTTCCAATAGGAGGCTGTACAT 6903 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 || || |||| || || || || || ||||| || ||||| | || || | | Sbjct 6902 CTCGGAGTGGATGTTTTCGATGGCGATCTGGAACCCATAGAAGGCGCGTGCCTCGGCGGA 6843 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 || ||||||| || || | |||||||||| || ||| | ||||| || || Sbjct 6842 TTGGACTTCTTTCATGAACCTTCCGGCGAGATTTTCTAGGAATATCCAGTCGGAGGCGGC 6783 Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATC 93570 || || || | | || | || || || || | ||| | || ||||| | Sbjct 6782 GAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGTTCGCCGTCTGTGAGGGAGTCCCAGTG 6723 Query 93571 GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTT 93630 | ||||| ||| ||||||||||||||| | ||||| || || ||||| ||||| || Sbjct 6722 GCGGAGATCGGATGAGAGATCGACTTCTTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTT 6663 Query 93631 GTACATATCCCATAT 93645 |||||| ||||| || Sbjct 6662 GTACATTTCCCAGAT 6648 >seq39031 Length=108874 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/96 (81%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 31864 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 31807 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||| || ||||| ||||||| || || || Sbjct 31806 CGTGGGTTCAAATCCCACTTCTGACAATTTTTTTTT 31771 >seq35811 Length=6621 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/107 (79%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGC 126322 |||| ||| |||||||||||||||||||||||||||||| | |||||| || | || Sbjct 1583 ACAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGC 1526 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||| || |||||| ||| | ||| |||| ||||||||| Sbjct 1525 GTGGGTTCAAATCCCACAGCTGTC--ATTTCTATTTTTATTTTTGTT 1481 >seq35664 Length=12214 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 3445 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3502 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| |||||| || || Sbjct 3503 GGGTTCAAATCCCACAGCTGTCAAATTCTTTTT 3535 >seq32367 Length=12065 Score = 89.7 bits (98), Expect = 6e-13 Identities = 189/282 (67%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 ||| || || || |||||||||||||| | || || | | || ||||| | Sbjct 2811 CTCAATGGCGATCTGGAATCCGTAGAAGGCGCGCGCCTCAGCGGATTGGACTTCCTTCAT 2870 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 || || | |||| |||||| |||| || || || || || ||||| ||||||| | Sbjct 2871 GAACCTTCCGGCGAGGTTTTCAATGACAATGCCGTCAGAAGCGGCAAAGAAAGCCAGGAC 2930 Query 93526 ATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA 93585 || | ||||| || ||| || || | || | ||| | | || || | || Sbjct 2931 GTGGGTGATAAAGTGGCGCTCGTCGTCGGTCAGGGAGTTCCAGTGGCGGAGGTCGTCGGA 2990 Query 93586 AAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || ||||| || || | ||||| || || ||||| ||||| |||||||| |||||||| Sbjct 2991 GAGGTCGACCTCCTCAGCGGTCCAGAATGAAGCTTCGGCTTTCTTGTACATTTCCCATAT 3050 Query 93646 GTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTT 93687 | | ||||| ||||| || ||| |||||| | ||||| Sbjct 3051 CTGAGGGTATTGGATTGGGAACATGCAAAAACGCTCTGGGTT 3092 >seq27310 Length=30685 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/96 (81%), Gaps = 6/96 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 29398 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 29455 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||| || ||||| ||||||| || || || Sbjct 29456 CGTGGGTTCAAATCCCACTTCTGACAATTTTTTTTT 29491 >seq40964 Length=18864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 2789 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 2730 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||| || ||||| ||||||||| Sbjct 2729 GTGGGTTCAAATCCCACTTCTGACAAAT 2702 >seq36504 Length=8553 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 1111 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 1054 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 1053 CGTGGGTTCAAATCCCACTTCTGACA 1028 >seq43196 Length=72091 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/105 (79%), Gaps = 6/105 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 20931 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 20874 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||| || |||||| ||| | |||||| || |||| |||| Sbjct 20873 GGGTTCAAATCCCACAGCTGTC--ATTATTTTT--AATTAATGTT 20833 >seq42597 Length=12904 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 8721 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 8664 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 8663 TTCAAATCCCACAGCTGTCAATTTTTT 8637 >seq40516 Length=23907 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/94 (81%), Gaps = 8/94 (9%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 14005 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 14062 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| ||||| |||||| Sbjct 14063 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATT 14094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556551296767360