Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq32376 105 6e-18 seq41040 96.9 3e-15 seq39663 96.9 3e-15 seq40108 93.3 4e-14 seq14423 93.3 4e-14 >seq32376 Length=6472 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||||||||| || |||| || || || ||||| |||| |||| Sbjct 311 ATGCAAATTTTTGTCAAGACCTTGACAGGAAAGACAATTACTTTGGAGGTGGAAAGTTCA 252 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111305 ||| || ||| | || ||| ||| ||| || || || ||| ||||| | ||||| Sbjct 251 GATACTATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGGC-ATCCCGCCAGATCA 193 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || |||||||| | ||| || || || | |||||| || |||| | || |||||||| Sbjct 192 GCAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAAGATGGTAGAACTCTTGCTGATTATAA 133 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || ||||| | ||||| || ||||| || || ||||||| Sbjct 132 CATTCAGAAGGAGTCTACTTTGCATTTGGTCTTGCGGCTTCGTGGTGGCA 83 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||||||||| || |||| || || || || || |||| ||| | Sbjct 539 ATGCAAATTTTTGTCAAGACCTTGACAGGAAAGACAATAACTTTGGAGGTTGAAAGCTCA 480 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111305 ||| || ||| | || ||| || ||| ||||| || ||| ||||| | ||||| Sbjct 479 GATACTATTGATAATGTGAAATCCAAGATTCAGGACAAGGAGGGC-ATCCCGCCAGATCA 421 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || |||||||||| ||| || |||||| | |||||| | || |||| ||||| || Sbjct 420 GCAGAGGCTTATTTTTGCTGGGAAACAACTTGAAGATGGAAGGACCTTGGCTGATTACAA 361 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || || || |||||||| ||| |||| ||| | ||||||| Sbjct 360 CATCCAGAAGGAGTCCACCCTACATTTGGTGCTGCGACTGAGAGGTGGCA 311 >seq41040 Length=490441 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| ||||| || || ||||| ||||| ||||||||||||| ||||||||| Sbjct 178888 AAAATTCAAGACAAGGAGGGTATTCCCCCAGATCAGCAAAGGCTTATTTTCGCGGGCAAA 178829 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 ||| | || ||| |||| |||| |||||||| || || ||||| || || || || Sbjct 178828 CAACTTGAGGATGGCCGAACTCTGGCAGATTATAACATCCAGAAAGAGTCAACTCTCCAC 178769 Query 111391 TTAGTGTTGCGTCTGCGCGGTGG 111413 | |||||||| || || ||||| Sbjct 178768 CTTGTGTTGCGACTCCGTGGTGG 178746 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| ||||| || || ||||| ||||| ||||||||||||| || |||||| Sbjct 167669 AAAATTCAAGACAAGGAGGGTATTCCCCCAGATCAGCAAAGGCTTATTTTCGCTGGCAAA 167610 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 || | || ||| |||| |||| |||||||| || || ||||| || || || || Sbjct 167609 CAGCTTGAGGATGGCCGAACTCTGGCAGATTATAACATCCAGAAAGAGTCAACTCTCCAC 167550 Query 111391 TTAGTGTTGCGTCTGCGCGGT 111411 | |||||||| || || ||| Sbjct 167549 CTTGTGTTGCGACTCCGTGGT 167529 >seq39663 Length=443811 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || |||| || || |||||||| |||| |||| | | Sbjct 344800 ATGCAAATCTTTGTGAAGACCTTGACAGGGAAGACCATTACATTGGAGGTGGAAAGCTCC 344741 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | | || || || ||| |||||||| || |||| || || Sbjct 344740 GATACAATTGACAATGTTAAGGCGAAGATTCAGGACAAAGAGGGTATTCCTCCAGACCAG 344681 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || |||| ||| ||||| || ||||| ||| | |||| |||| ||||||||| Sbjct 344680 CAGCGACTGATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGAACTTTGGCAGATTATAAT 344621 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || || || || || || || ||| | || |||| || || |||||| Sbjct 344620 ATCCAGAAGGAGTCCACCCTGCATCTTGTCCTGCGCCTTCGTGGTGGC 344573 >seq40108 Length=192235 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| || || |||| || || || || || |||| |||| | Sbjct 160547 ATGCAAATTTTTGTGAAGACCTTGACAGGAAAGACAATAACGTTGGAGGTGGAAAGCTCA 160606 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111305 ||| || ||| | || ||| || ||| ||||| || ||| ||||| | || || Sbjct 160607 GATACTATTGATAATGTGAAAGCCAAGATTCAGGACAAGGAGGGC-ATCCCGCCAGACCA 160665 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||||| || | ||| || ||||| | |||||| | ||| | || |||||||| Sbjct 160666 GCAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGAAGAACCCTTGCTGATTATAA 160725 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || ||||| || ||||| |||||||| || || || |||| Sbjct 160726 CATTCAGAAGGAGTCTACTCTGCATTTGGTGTTGCGGCTTCGTGGAGGCA 160775 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||||||||| || | || || || ||||||||| | || |||| | Sbjct 160775 ATGCAAATTTTTGTCAAGACCTTAACAGGAAAGACCATTACCTTAGAGGTGGAAAGCTCT 160834 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| ||| || ||||| || || ||||| || || Sbjct 160835 GATACGATTGATAATGTGAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 160894 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | ||||||| || || || || ||||||||| || |||| ||||| ||| Sbjct 160895 CAGCGACTTATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACACTGGCAGATTACAAT 160954 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || ||||| ||||| || || ||| | || | || || || |||||| Sbjct 160955 ATTCAAAAGGAATCCACTCTGCATCTTGTCCTTCGACTTCGTGGTGGC 161002 >seq14423 Length=23748 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| ||||| | |||||||| ||||||||| | || |||| Sbjct 11410 ATGCAGATTTTTGTGAAAACTCTCACCGGCAAGACCATTACCCTTGAGGTGGAAAGTTCA 11469 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111305 ||| | ||| | | || ||| ||||| ||||| ||||| | |||| | ||||| Sbjct 11470 GATACCATTGACAATGTTAAAGCGAAAATCCAAGACAAGGAAGG-GATCCCACCTGATCA 11528 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||||||||| | ||| || || |||||||| ||| | || | || ||||| || Sbjct 11529 GCAAAGGCTTATCTTTGCTGGTAAGCAATTGGAGGATGGTCGCACCCTTGCTGATTACAA 11588 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || ||||| || ||||| || || | || | || || | ||||||| Sbjct 11589 CATTCAAAAGGAGTCTACCCTTCACCTTGTTCTTCGCCTCAGGGGTGGCA 11638 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||||||||| || |||| || || ||||| || |||| ||| | Sbjct 12094 ATGCAAATTTTTGTCAAGACCTTGACAGGAAAGACCATAACTTTGGAGGTGGAGAGCTCA 12153 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| || ||| || || || ||| | || || || Sbjct 12154 GATACCATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAGGGCATCCCACCAGACCAG 12213 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || |||||||| | ||| || ||||| | |||||| | ||| | || ||||| || Sbjct 12214 CAGAGGCTTATATTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCTGATTACAAC 12273 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || ||||| || ||||| || ||||| || || ||||||| Sbjct 12274 ATTCAGAAGGAGTCTACTCTGCATTTGGTCTTGCGGCTTCGTGGTGGCA 12322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422810752508800