Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1704 214 3e-50 seq42527 181 2e-40 seq36964 181 2e-40 seq32367 141 2e-28 seq37232 140 6e-28 seq37024 96.9 7e-15 >seq1704 Length=114806 Score = 214 bits (236), Expect = 3e-50 Identities = 390/566 (69%), Gaps = 19/566 (3%) Strand=Plus/Plus Query 42297 GACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGAC 42356 || |||||| ||||||||||| || | |||| |||||||||||| || | ||| Sbjct 97093 GAAATCTGGCAAATGTACAAGAAAGCCCTCGCCTCCTTCTGGACCGCCGAAGAAGTCGAC 97152 Query 42357 CTGGCCAAGGACACGGCCGGCTGGGAGTCACT----GTCTGAGAACGAAAAGTTTTTCCT 42412 || || | ||| || |||||| || || | | | ||||| | ||| | Sbjct 97153 CTCTCCCACGACCTCCGCGACTGGGACTCCCTCAACGACGGCGAACGCCAC----TTCAT 97208 Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472 || || | || ||||||||||||||||| |||||||| ||| || || || ||| Sbjct 97209 CACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAAAATCTCGCCGG 97268 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGC 42532 |||||||||||||| || || | || || ||| |||||||||||||||||| || Sbjct 97269 AAGGTTCATGAAAGAAGTCCAAATCGCCGAAGCACGCGCCTTCTACGGCTTCCAGATCGC 97328 Query 42533 CATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC 42592 ||| |||||| | ||||| ||| ||||| | ||| | | || |||||| ||| | Sbjct 97329 CATCGAGAACATCCACTCCGAGATGTACAGCCTCCTGTTAGAAACCTACATCAAGGACTC 97388 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | |||| || | || ||| | ||| | || || || |||||| || |||||| || Sbjct 97389 CACCGAGAAACACCGCCTCTTCCACGCCGTCGAAACCATCCCCTGCGTCGCGAAGAAAGC 97448 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCA-ACGTTCGGCGAGAGGCTGGTAG 42711 || |||||| | || |||||||| | | || | | |||| ||| || |||| | Sbjct 97449 CGAGTGGGCGATGAAATGGATCGA----CGCATCGGATTCCTTCGCGGAGCGGGTGGTTG 97504 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 |||| || ||| || || ||||||||||| || |||| | | ||||||||| | | Sbjct 97505 CCTTCGCCTGCGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCGCGATCTTCTGGTTGA 97564 Query 42772 AGCAGAA---GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACG 42828 | | || ||| || ||||| || ||||| ||||| ||||| || ||| | |||| Sbjct 97565 A--AAAACGCGGTCTC-ATGCCGGGGCTCACGTTCTCCAACGAGCTGATCTCACGCGACG 97621 Query 42829 AGGGGCTGCATAGGGACTTTGCCTGC 42854 ||||||| || | || || || ||| Sbjct 97622 AGGGGCTTCACTGCGATTTCGCGTGC 97647 >seq42527 Length=94160 Score = 181 bits (200), Expect = 2e-40 Identities = 309/445 (69%), Gaps = 5/445 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| ||||| |||||| || || || ||| ||||||||| Sbjct 57567 CTCGCCTTCTTCGCCGCCTCCGACGGGATAGTCCTCGAAAATCTCGCCGGAAGGTTCATG 57626 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || || || | | ||||| ||| ||||||| |||||||||| || || |||||| Sbjct 57627 AAGGAAGTCCAATCCGCCGAGGCACGCGCCTTCTACAGCTTCCAGATCGCGATCGAGAAC 57686 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | ||| | | || |||||| ||| ||| || Sbjct 57687 ATCCACTCCGAGATGTACAGCCTCCTGTTAGAAACCTACATCAAGGACTCCGCTGAAAAA 57746 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | || ||| ||| |||| || || |||||| |||||||||| || || |||||| Sbjct 57747 TCCAACCTCTTCCGCGCCGTGGAAACCATCCCCTGCGTCAAGAAGAAAGCCGAGTGGGCG 57806 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 | || |||||||| ||||| | |||| ||| | || || || || || Sbjct 57807 TTGAAATGGATCGACGCCACCGAC---TCCTTCGCGGAGCGTCTCGTCGCTTTCGCCTGT 57863 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 || || || ||||||||||| || |||| | |||| |||||||| ||| | | | | Sbjct 57864 GTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCGCCATTTTCTGGCTGAAG-AAACGCGG 57922 Query 42783 TC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||| || ||||| || || ||||| || || | ||||||||||| || | Sbjct 57923 TCTCATGCCGGGGCTCACGTTTTCCAACGAGCTGATTTCACGTGACGAGGGGCTTCACTG 57982 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCG 42866 || || || ||| | ||| |||| Sbjct 57983 CGATTTCGCGTGCTTGTTGTACTCG 58007 >seq36964 Length=242943 Score = 181 bits (200), Expect = 2e-40 Identities = 309/445 (69%), Gaps = 5/445 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| ||||| |||||| || || || ||| ||||||||| Sbjct 59350 CTCGCCTTCTTCGCCGCCTCCGACGGGATAGTCCTCGAAAATCTCGCCGGAAGGTTCATG 59409 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || || || | | ||||| ||| ||||||| |||||||||| || || |||||| Sbjct 59410 AAGGAAGTCCAATCCGCCGAGGCACGCGCCTTCTACAGCTTCCAGATCGCGATCGAGAAC 59469 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | ||| | | || |||||| ||| ||| || Sbjct 59470 ATCCACTCCGAGATGTACAGCCTCCTGTTAGAAACCTACATCAAGGACTCCGCTGAAAAA 59529 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | || ||| ||| |||| || || |||||| |||||||||| || || |||||| Sbjct 59530 TCCAACCTCTTCCGCGCCGTGGAAACCATCCCCTGCGTCAAGAAGAAAGCCGAGTGGGCG 59589 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 | || |||||||| ||||| | |||| ||| | || || || || || Sbjct 59590 TTGAAATGGATCGACGCCACCGAC---TCCTTCGCGGAGCGTCTCGTCGCTTTCGCCTGT 59646 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 || || || ||||||||||| || |||| | |||| |||||||| ||| | | | | Sbjct 59647 GTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCGCCATTTTCTGGCTGAAG-AAACGCGG 59705 Query 42783 TC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||| || ||||| || || ||||| || || | ||||||||||| || | Sbjct 59706 TCTCATGCCGGGGCTCACGTTTTCCAACGAGCTGATTTCACGTGACGAGGGGCTTCACTG 59765 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCG 42866 || || || ||| | ||| |||| Sbjct 59766 CGATTTCGCGTGCTTGTTGTACTCG 59790 >seq32367 Length=12065 Score = 141 bits (156), Expect = 2e-28 Identities = 339/506 (67%), Gaps = 19/506 (4%) Strand=Plus/Minus Query 42444 GACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAG 42503 ||||| | |||| | | |||| ||| ||||||||||| || | || | | |||| Sbjct 2808 GACGGGTTTGTCATTCAAAACCCCGCCGGGAGGTTCATGAAGGAAGGCCAATCCGCTGAG 2749 Query 42504 GCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCC 42563 || ||| ||||||||| |||||||| ||||| |||||| | ||||| || |||| | Sbjct 2748 GCCCGCGCCTTCTACGGATTCCAGATCGCCATTGAGAACATCCACTCGGAAATGTA---C 2692 Query 42564 AAACTGCTC---AACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 | ||||| | || ||||| ||| ||| ||| | | | || ||| || Sbjct 2691 AGTTTGCTCTTAGAAACCTACATTAAGGACTCCGCGGAGAAGAGCAGACTCTTCCGTGCA 2632 Query 42621 ATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGT 42680 || || || | || ||| | | |||||| || || ||||| || || |||||| | Sbjct 2631 ATCGAAACTGTTCCTTGCGTAAGGAAGAAAGCCGAGTGGGCCCTGAAATGGATCCA---- 2576 Query 42681 CCCGAC-GCAAC---GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTT 42736 | |||| | || |||| || |||| || || || | || || || ||||| Sbjct 2575 CTCGACAGATACTTTCTTCGCGGAACGGCTTGTCGCGTTCGCGTGTGTGGAAGGAATCTT 2516 Query 42737 CTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGAC 42795 |||||| || |||| | ||||||||||||| ||| || || || ||||| || | Sbjct 2515 CTTCTCCGGGAGCTTCTGCGCCATCTTCTGGCTGAAGAAGCGCGGCCTC-ATGCCGGGGC 2457 Query 42796 TCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCC 42855 | || ||||| ||||| || ||| | | ||||||||||| || | ||||| || || | Sbjct 2456 TAACATTCTCCAACGAGCTGATCTCCCGTGACGAGGGGCTCCACTGCGACTTCGCGTGTC 2397 Query 42856 TCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCA 42915 | ||| ||| || ||| ||| ||||| | | ||||||| | || || | Sbjct 2396 TGATGTACTC---CCTCCTGAGGACCAAGCTCACCGAGGAGCGCATGGTGGGGATTGTGC 2340 Query 42916 CGGAGGCCGTGGAGATCGAGAAGGAG 42941 || || ||||||||||||| |||| Sbjct 2339 ATGACGCGGTGGAGATCGAGAGGGAG 2314 Score = 122 bits (134), Expect = 2e-22 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGA 42367 ||||||||||| || | || | || ||||||||| |||||| | ||||| || | || Sbjct 3041 ATGTACAAGAAAGCCGAAGCT-TCATTCTGGACCGCTGAGGAGGTCGACCTCTCCGACGA 2983 Query 42368 CA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGG 42426 | | ||| |||| | || ||| | || |||| || ||| || | |||| Sbjct 2982 CCTCCGCCA-CTGGAACTCCCTGACCGACGACGAGCGCCACTTTATCACCCACGTCCTGG 2924 Query 42427 CCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAG 42486 | ||||| ||||| ||||||||||| |||| ||| ||||| ||| ||||||||||| | Sbjct 2923 CTTTCTTTGCCGCTTCTGACGGCATTGTCATTGAAAACCTCGCCGGAAGGTTCATGAAGG 2864 Query 42487 AGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAG 42539 | || || | | |||||||||| ||||||||| |||||||| ||||| ||| Sbjct 2863 AAGTCCAATCCGCTGAGGCGCGCGCCTTCTACGGATTCCAGATCGCCATTGAG 2811 >seq37232 Length=10575 Score = 140 bits (154), Expect = 6e-28 Identities = 258/376 (69%), Gaps = 2/376 (1%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | |||| |||||||||||| || | || || Sbjct 6648 ATCTGGGAAATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAAGAAGTCGATCTC 6707 Query 42360 GCCAAGGA-CACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAA 42418 | || | | ||| |||||| || || | || |||| ||| ||| | Sbjct 6708 TCATCCGATCTCCGCCA-CTGGGACTCCCTCACAGACGGCGAACGCCACTTCATCACCCA 6766 Query 42419 CATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTT 42478 | | || ||||||||||||||||| ||| | ||| || || || || ||| ||||| Sbjct 6767 CGTCCTCGCCTTCTTCGCCGCCTCCGACTGGATATTCCTAGAAAATCTCGCCGGAAGGTT 6826 Query 42479 CATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGA 42538 ||||||||| || || | | ||||| ||| |||||| || |||||||| ||||| || Sbjct 6827 CATGAAAGAAGTCCAATCCGCCGAGGCACGCGCCTTCTATGGGTTCCAGATCGCCATCGA 6886 Query 42539 GAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGA 42598 ||| | ||||| ||| ||||| | || | | || |||||| ||| ||| ||| Sbjct 6887 AAACATCCACTCCGAGATGTACAGCCTCCTATTGGAAACCTACATCAAGGACTCCGCCGA 6946 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 | | || ||| ||| | || || || |||||| |||||||||| |||||||| Sbjct 6947 GAAATCCAACCTCTTCCGCGCCGTCGACACCATCCCCTGCGTCAAGAAGAAAGCGGACTG 7006 Query 42659 GGCGCTCAACTGGATC 42674 |||| | || |||||| Sbjct 7007 GGCGTTGAAATGGATC 7022 >seq37024 Length=156878 Score = 96.9 bits (106), Expect = 7e-15 Identities = 194/283 (69%), Gaps = 11/283 (4%) Strand=Plus/Plus Query 42576 ACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCC 42635 || |||||| ||| || |||| || | || ||| | ||| | || || || ||| Sbjct 23 ACCTACATCAAGGACTCCACCGAGAAACACCGCCTCTTCCACGCCGTCGAAACCATCCCC 82 Query 42636 TGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAA-CGTT 42694 ||| || |||||| || || |||||| | || |||||||| | | || | | || Sbjct 83 TGCGTCGCGAAGAAAGCCGAGTGGGCGATGAAATGGATCGA----CGCATCGGATTCCTT 138 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 || ||| || |||| ||||| || ||| || || ||||||||||| || |||| Sbjct 139 CGCGGAGCGGGTGGTTGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTG 198 Query 42755 CTCCATCTTCTGGCTCAAGCAGAA---GGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 | | ||||||||| | || | || ||| || ||||| || ||||| ||||| ||||| Sbjct 199 CGCGATCTTCTGGTTGAA--AAAACGCGGTCTC-ATGCCGGGGCTCACGTTCTCCAACGA 255 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGC 42854 || ||| | ||||||||||| || | || || || ||| Sbjct 256 GCTGATCTCACGCGACGAGGGGCTTCACTGCGATTTCGCGTGC 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943814336272640