Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq32376 113 4e-20 seq39663 95.1 1e-14 seq14423 95.1 1e-14 seq43196 86.0 5e-12 seq40108 86.0 5e-12 >seq32376 Length=6472 Score = 113 bits (124), Expect = 4e-20 Identities = 168/237 (71%), Gaps = 20/237 (8%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||| |||||||||| ||| || ||| ||||||||| ||||||||||| ||| Sbjct 313 CCACCTCTCAGTCGCAGCACCAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCAGCC 372 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | | || || | ||| || || ||||| || || | ||||||||| ||| Sbjct 373 AA-GGTCCTTCCATCTTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGCGG 431 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC--- 34076 | || ||| |||||| ||| | |||| ||||| ||||| ||| || Sbjct 432 GATGCCCTCCTTGTCCTGAATCT---------TGGATTTCACATTATCAATAGTATCTGA 482 Query 34077 GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||| ||| |||||||| ||||| || | || || ||||| |||||||| Sbjct 483 GCTTTCAACCTCCAAAGTTATTGTCTTTCCTGTCAAGGTCTTGACAAAAATTTGCAT 539 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| |||||||||| |||||| || ||||||||| ||||||||||| ||| Sbjct 541 CCACCTCTCAATCGCAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCC 600 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | | || || | ||| || || ||||| || || | ||| ||||| || Sbjct 601 AA-GGTCCTTCCATCTTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGTTGATCTGGAGG 659 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | | |||||||||| |||||| Sbjct 660 GATACCCTCTTTGTCCTGAATTTT 683 >seq39663 Length=443811 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | || ||||| || ||||| || ||| ||||||||| || || ||||| Sbjct 344570 GAAGCCACCACGAAGGCGCAGGACAAGATGCAGGGTGGACTCCTTCTGGATATTATAATC 344629 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||||| ||| | || ||||| |||||||| ||||| ||||| |||||||| || Sbjct 344630 TGCCAAAGTTCGACCATCCTCCAACTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGG 344689 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAA 34051 || | | |||||||||| ||| || ||||| Sbjct 344690 AGGAATACCCTCTTTGTCCTGAATCTTCGCCTTAA 344724 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/238 (68%), Gaps = 20/238 (8%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||||| ||||| |||| |||||| ||| ||||||||| ||||||||||| | Sbjct 345257 ACCGCCTCTCAATCGCAGAACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATC-GG 345315 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | ||| | | || || | ||| || || ||||| ||||| | |||||||| | Sbjct 345316 CGAGGGTCCTTCCATCCTCGAGTTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTG 345375 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC-- 34076 | | || |||||||||| || || || ||||| ||||| | | || Sbjct 345376 GGATGCCCTCTTTGTCCTGGATCTTCGCCT---------TCACATTATCAATGGTGTCTG 345426 Query 34077 -GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | |||| ||| || |||||||| || || | ||| || |||||||| ||||| Sbjct 345427 AGGATTCCACCTCGAGGGTGATTGTTTTACCCGTCAATGTCTTGACAAAGATCTGCAT 345484 >seq14423 Length=23748 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 18/228 (8%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || ||||| || ||| ||||||||||| |||||||||||||| || Sbjct 12767 AGGCGAAGGACAAGATGCAGGGTGGATTCCTTCTGAATATTGTAATCTGCCAAAGTACGG 12708 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||||||||||||| ||||| |||| ||||| || || || | | ||| Sbjct 12707 CCATCCTCCAATTGCTTGCCAGCAAAAATCAATCGCTGTTGGTCTGGAGGAATACCCTCC 12648 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---GCATTCGACC 34086 |||||| | | || |||| ||||| ||||| ||| || || ||| ||| Sbjct 12647 TTGTCC-TGGATCTTCGCTT--------TCACATTATCAATAGTATCAGAGCTTTCCACC 12597 Query 34087 ------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || || |||||||| || || |||||||| || |||||| Sbjct 12596 TCCAAGGTAATAGTCTTTCCGGTCAGGGTCTTCACAAATATCTGCATT 12549 >seq43196 Length=72091 Score = 86.0 bits (94), Expect = 5e-12 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| || || |||||||| |||||||| ||| ||||||||| ||||||||||| | Sbjct 32293 ACCTCCCCTGAGACGCAGCACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCCG- 32351 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| ||| | | || || | ||||| || ||||| |||| | |||||||||| Sbjct 32352 CAAGAGTCCTTCCATCCTCGAGCTGCTTACCAGCAAAAATCAACCTCTGCTGATCC 32407 >seq40108 Length=192235 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/236 (68%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||||||| ||||| ||| || || ||||||||||||||| ||||| || Sbjct 160773 CCTCCACGAAGCCGCAACACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGCA 160714 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | || || || ||||| || || | |||||| || ||| Sbjct 160713 AGGGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGCGGG 160654 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---G 34077 | || ||| |||||| | | | || |||| ||||| ||||| ||| || | Sbjct 160653 ATGCCCTCCTTGTCC-TGAATCTTGGCTT--------TCACATTATCAATAGTATCTGAG 160603 Query 34078 CATTCGAC------CGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| || ||||||||| ||||| || | || |||||||| |||||||| Sbjct 160602 CTTTCCACCTCCAACGTTATTGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 160547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396847229900128