Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq37024 141 1e-28 seq1704 141 1e-28 seq42527 134 2e-26 seq36964 134 2e-26 seq32367 127 2e-24 seq32508 93.3 5e-14 seq37232 91.5 2e-13 seq40957 86.0 7e-12 >seq37024 Length=156878 Score = 141 bits (156), Expect = 1e-28 Identities = 357/535 (67%), Gaps = 11/535 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || ||||| |||||||| |||||||| || ||||| | ||| || |||||| Sbjct 583 GTACTCTCCAACGCGCTTCTCAAAGAAGTTAGTTTTCCCCTTCAACGAAATCAACTCCAT 524 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTGTTTGAGGAGAC 125876 || ||| |||||| || | | | || ||| ||||| || | || | Sbjct 523 CCAAGGAAACGGGTTCACCACATTATACACT-TTCCCACACCCAAGCTTCTCAAGCCAAT 465 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 ||||| || ||||||| |||| | ||||| || ||||| || | | || Sbjct 464 AATCCGCAACAAACTCAATATACTGACTCATCTGATCCCCATTCATCCCCAACAACGCAC 405 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | || |||||||| | | ||| || ||||||| ||||| || || ||||| || | | Sbjct 404 ACGGCAGCGCGTCGCACACAAACTCCCTCTCAATCTCCACCGCATCACGCACAATCCCCT 345 Query 125997 GAATGGTGTCCACCCCAGG--TCTATTGCGCAA-AGTCTTGAAGAGTTCCACGGCAAACT 126053 | | ||| | | | | ||| | | || || | || | |||| ||| | Sbjct 344 TCACGCGCTCCTCGCTAAGCTTCTTCTCCAGAAGAGAATACAACAAG--CACGCGAAA-T 288 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | ||| || |||||||| || ||||| || || || ||||| || || ||||||| Sbjct 287 CGCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGAACGTGAGCCCCGGCATGA 228 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 |||| || || ||||||||||| ||||| || || || ||||||||||| || |||| Sbjct 227 GACCGCGTTTTTTCAACCAGAAGATCGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCA 168 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCA 126233 | || ||||| |||| | ||||| || ||||| ||| || ||| | ||| |||| Sbjct 167 CGCAGGCGAAGGCAACCACCCGCTCCGCGAAGGAATCCGA---TGCGTCGATCCATTTCA 111 Query 126234 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 ||||||||| || || ||| ||| || |||| ||| | || || | ||||| Sbjct 110 TCGCCCACTCGGCTTTCTTCGCGACGCAGGGGATGGTTTCGACGGCGTGGAAGAG 56 >seq1704 Length=114806 Score = 141 bits (156), Expect = 1e-28 Identities = 357/535 (67%), Gaps = 11/535 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || ||||| |||||||| |||||||| || ||||| | ||| || |||||| Sbjct 97932 GTACTCTCCAACGCGCTTCTCAAAGAAGTTAGTTTTCCCCTTCAACGAAATCAACTCCAT 97873 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTGTTTGAGGAGAC 125876 || ||| |||||| || | | | || ||| ||||| || | || | Sbjct 97872 CCAAGGAAACGGGTTCACCACATTATACACT-TTCCCACACCCAAGCTTCTCAAGCCAAT 97814 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 ||||| || ||||||| |||| | ||||| || ||||| || | | || Sbjct 97813 AATCCGCAACAAACTCAATATACTGACTCATCTGATCCCCATTCATCCCCAACAACGCAC 97754 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | || |||||||| | | ||| || ||||||| ||||| || || ||||| || | | Sbjct 97753 ACGGCAGCGCGTCGCACACAAACTCCCTCTCAATCTCCACCGCATCACGCACAATCCCCT 97694 Query 125997 GAATGGTGTCCACCCCAGG--TCTATTGCGCAA-AGTCTTGAAGAGTTCCACGGCAAACT 126053 | | ||| | | | | ||| | | || || | || | |||| ||| | Sbjct 97693 TCACGCGCTCCTCGCTAAGCTTCTTCTCCAGAAGAGAATACAACAAG--CACGCGAAA-T 97637 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | ||| || |||||||| || ||||| || || || ||||| || || ||||||| Sbjct 97636 CGCAGTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGAACGTGAGCCCCGGCATGA 97577 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 |||| || || ||||||||||| ||||| || || || ||||||||||| || |||| Sbjct 97576 GACCGCGTTTTTTCAACCAGAAGATCGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCA 97517 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCA 126233 | || ||||| |||| | ||||| || ||||| ||| || ||| | ||| |||| Sbjct 97516 CGCAGGCGAAGGCAACCACCCGCTCCGCGAAGGAATCCGA---TGCGTCGATCCATTTCA 97460 Query 126234 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 ||||||||| || || ||| ||| || |||| ||| | || || | ||||| Sbjct 97459 TCGCCCACTCGGCTTTCTTCGCGACGCAGGGGATGGTTTCGACGGCGTGGAAGAG 97405 >seq42527 Length=94160 Score = 134 bits (148), Expect = 2e-26 Identities = 159/213 (75%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || ||||||||||| || || || || || || || || || ||||||||||| Sbjct 57980 GTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAAACGTGAGCCCCGGCATGAGACC 57921 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || ||||||| ||||||||| || || || || ||||||||||| || |||||||| Sbjct 57920 GCGTTTCTTCAGCCAGAAAATGGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACACA 57861 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 ||||| || | ||||||||| || |||||| || | | ||| | ||| |||| ||| Sbjct 57860 GGCGAAAGCGACGAGACGCTCCGCGAAGGAG-TCG--GTGGCGTCGATCCATTTCAACGC 57804 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGT 126270 ||||| || || |||| || || |||| ||| Sbjct 57803 CCACTCGGCTTTCTTCTTGACGCAGGGGATGGT 57771 >seq36964 Length=242943 Score = 134 bits (148), Expect = 2e-26 Identities = 159/213 (75%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || ||||||||||| || || || || || || || || || ||||||||||| Sbjct 59763 GTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAAACGTGAGCCCCGGCATGAGACC 59704 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || ||||||| ||||||||| || || || || ||||||||||| || |||||||| Sbjct 59703 GCGTTTCTTCAGCCAGAAAATGGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACACA 59644 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 ||||| || | ||||||||| || |||||| || | | ||| | ||| |||| ||| Sbjct 59643 GGCGAAAGCGACGAGACGCTCCGCGAAGGAG-TCG--GTGGCGTCGATCCATTTCAACGC 59587 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGT 126270 ||||| || || |||| || || |||| ||| Sbjct 59586 CCACTCGGCTTTCTTCTTGACGCAGGGGATGGT 59554 >seq32367 Length=12065 Score = 127 bits (140), Expect = 2e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| ||||||||||||||||| || || || ||||| || || |||||||| || Sbjct 2413 GTGGAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAATGTTAGCCCCGGCATGAGGCC 2472 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| || || || || || |||||||||||||| |||||||| Sbjct 2473 GCGCTTCTTCAGCCAGAAGATGGCGCAGAAGCTCCCGGAGAAGAAGATTCCTTCCACACA 2532 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||||||||| | || || || || ||| Sbjct 2533 CGCGAACGCGACAAGCCGTTCCGCGAAG 2560 >seq32508 Length=19167 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT-GGCATGAGAC 126116 |||||| ||||| |||| ||||||| || || ||| | | |||| |||||||| | Sbjct 4083 GTGGAGGCCCTCATCACACAAGATGAGCTCGTTAGAGTAAGTGA-TCCTCGGCATGAGGC 4141 Query 126117 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACAC 126176 | |||||||| | | || | || || || || ||| ||||||||||| || |||| | Sbjct 4142 CGCGCTTCTTGAGCTAGTAGATAGCGCAGAAGCTACCAGAGAAGAAGATCCCTTCCATGC 4201 Query 126177 ACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCG 126236 |||| ||||| | || | || |||||||| || | || | ||| |||| || Sbjct 4202 ACGCAAACGCGACGAAGCATTCTGCAAAGGAATCGGA---GGAGTTGATCCATTTCAGCG 4258 Query 126237 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGA 126275 |||||| ||||| || ||| || |||| ||||| || Sbjct 4259 CCCACTCTGCCTTCTTGGCGACGCAGGGGATGGTCTCGA 4297 >seq37232 Length=10575 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || ||||||||||| || || | || || || || || || Sbjct 7155 GCAAAATCACAGTGAAGCCCCTCGTCACGTGAAATCAACTCGTTGGAAAACGTGAGCCCC 7096 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||||||||| || ||||||| ||||||||||||||| || || ||||||||||| Sbjct 7095 GGCATGAGACCGCGTTTCTTCAGCCAGAAAATCGCACAGAAGCTCCCGGAGAAGAAGATC 7036 Query 126167 CCCTCCAC 126174 || ||||| Sbjct 7035 CCTTCCAC 7028 >seq40957 Length=105852 Score = 86.0 bits (94), Expect = 7e-12 Identities = 244/369 (66%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 10789 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 10848 |||||| || || || | || | ||| |||||| || ||| | ||| || || || Sbjct 5508 ATCAAACCGGCCAGGTCTCAGTAAGGCAGAGTCAAGAATGTCAGCCCTGTTAGTTGCAGC 5449 Query 10849 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 10908 | ||||| ||| || || | ||||| |||||||| || ||||| ||||| |||| Sbjct 5448 AACGACAATGATACCGGTATTACCCTCAAACCCATCCATTTCTGTCAAAAGTTGGTTGAG 5389 Query 10909 GGTTTGTTCGCGTTCATCATTCGCGGGC---ATACCACCCGCACTGCGTTGCTTACCGAC 10965 ||| ||||| | |||||||||| | || ||| | | || ||| | || || Sbjct 5388 GGTCTGTTCTCTTTCATCATTCCCTCCACCAATTCCAGTCCCTCT---TTGTCTCCCAAC 5332 Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AAAG 11023 || ||||||||||| | || || || || || ||| || ||| |||| || Sbjct 5331 AGCATCAATTTCATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGC--CTTCTTGAAC 5274 Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAA 11083 | ||| ||||||| || || ||||| |||||||| || ||||| | | | | | Sbjct 5273 AAATCACGGACTCGAGAAGCGCCAACACCAACAAACATCTCAACAAACTCAGAACCAG-A 5215 Query 11084 CATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 11142 |||| || || || || || |||||| || || || ||| | | ||||||||| Sbjct 5214 TATTGAGAAAAACGGAACTCCGGCTTCACCGGCAATAGCCTTGGCTAACAAGGTCTTCCC 5155 Query 11143 CGTCCCAGG 11151 || || || Sbjct 5154 AGTTCCGGG 5146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597021590869120