Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq39663 109 5e-19 seq41040 96.9 3e-15 seq38321 93.3 4e-14 seq43196 87.8 2e-12 seq14423 84.2 2e-11 seq14855 82.4 8e-11 >seq39663 Length=443811 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||| ||| |||| ||| ||||| | | | |||||||| || |||||||| ||| Sbjct 345258 CCGCCTCTCAATCGCAGAACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCG 345317 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||||||||||||||||| | | | || || | || || || || || Sbjct 345318 AGGGTCCTTCCATCCTCGAGTTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGG 345377 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| ||| || || | | || | |||||| | || |||||| Sbjct 345378 ATGCCCTCTTTGTCCTGGATCTTCGCCTTCACATTATCAATGGTGTCTGAGGATTCCACC 345437 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| || | |||||||| |||| || || ||||| ||||||||| Sbjct 345438 TCGAGGGTGATTGTTTTACCCGTCAATGTCTTGACAAAGATCTGCATG 345485 >seq41040 Length=490441 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || |||| | | ||||| || ||||||||||||||| | Sbjct 178974 CCACCACGGAGACGGAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCC 179033 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | || || || |||||||| | | |||| || | ||||||||| || || Sbjct 179034 AAGGTTCTGCCA-TCTTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGTTGGTCTGGTGG 179092 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || |||||||| ||| |||| | || |||| || | ||||| | ||| Sbjct 179093 GATGCCCTCTTTGTC-TTGAATTTTGGCCTTCACATTG-TCAATTGTGTCTGAGCTCTCT 179150 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | || || ||||| || || || |||||||||||||| Sbjct 179151 ACCTCCAAAGTAATTGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCAT 179200 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||| | || | || | | | ||||| || ||||||||||| || | Sbjct 167072 CCACCCCTCAAACGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCAGCC 167131 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | || | ||||| || ||||| || | | |||| || | ||||||||| || || Sbjct 167132 AAAGTTCTGCCA-TCCTCAAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGG 167190 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||||||||| ||| |||| | || |||| || | |||||| | |||| Sbjct 167191 AATGCCTTCTTTGTC-TTGAATTTTAGCCTTCACATTG-TCGATGGTGTCAGAACTCTCC 167248 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | || || ||||| || || || ||||| || ||||| Sbjct 167249 ACCTCAAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 167298 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || |||| | | ||||| || |||||||||||||| | Sbjct 167755 CCACCACGGAGACGGAGCACCAAGTGTAGGGTGGACTCTTTCCGAATGTTGTAGTCGGCC 167814 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | || || || |||||||| | | |||| || | ||||||||| || || Sbjct 167815 AAGGTTCTGCCA-TCTTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGTTGGTCTGGTGG 167873 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || |||||||| ||| |||| | || |||| || | ||||| | |||| Sbjct 167874 GATGCCCTCTTTGTC-TTGAATTTTGGCCTTCACATTG-TCAATTGTGTCAGAGCTCTCC 167931 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | || || ||||| || || || |||||||| ||||| Sbjct 167932 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 167981 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||| | || | || | | | ||||| || ||||||||||| || | Sbjct 178290 CCACCCCTCAAACGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCAGCC 178349 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | || | ||||| || ||||| || | | |||| || | ||||||||| || || Sbjct 178350 AAAGTTCTGCCA-TCCTCAAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGG 178408 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||||||||| ||| |||| | || | ||| || | |||||| | |||| Sbjct 178409 AATGCCTTCTTTGTC-TTGAATTTTAGCCTTCACGTTG-TCGATGGTGTCAGAACTCTCC 178466 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | || || ||||| || || || ||||| || ||||| Sbjct 178467 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 178516 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | ||||||||||| |||||||| || Sbjct 179430 CCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 179489 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| || || || || | | | || |||||||| |||||||| || Sbjct 179490 AGGGTACGCCCATCCTCCAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGTGGG 179549 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| || || ||| |||| | || |||| || | ||| || | ||| | Sbjct 179550 ATCCCTTCCTTATC-TTGAATTTTAGCCTTCACATTG-TCTATGGTATCTGAACTCTCAA 179607 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | || || ||||| || || || ||||| || ||||| Sbjct 179608 CTTCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCAT 179656 >seq38321 Length=259108 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||| || || || || |||| Sbjct 81899 GACTCCTTCTGGATGTTGTAGTCAGCAAGTGTGCGGCCGTCTTCCAGCTGCTTCCCGGCG 81958 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 81959 AAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACG 82018 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||||||||||| || | ||| || || || || ||||| Sbjct 82019 TTGTCGATTGTGTCGGATGACTCCACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTC 82078 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 82079 ACGAAGATCTGCAT 82092 >seq43196 Length=72091 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | || | ||||| | || || || | | Sbjct 32099 GACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGCTTCCCTGCA 32158 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| | | ||| |||||||| || |||||||| ||||| ||| |||||| || | Sbjct 32159 AAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTGTC-TTGAATTTTTGCCTTCAC 32217 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||| |||| ||||||||| | || | || |||||||||| || | Sbjct 32218 GTTG-TCAATGGTATCGGAGCTCTCCACCTCCAGGGTAATGGTCTTACCAGTCAAGGTCT 32276 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 32277 TCACAAAGATCTGCAT 32292 >seq14423 Length=23748 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||| || | || || ||||| | ||| ||||| | | Sbjct 11603 GACTCCTTTTGAATGTTGTAATCAGCAAGGGTGCGACCATCCTCCAATTGCTTACCAGCA 11544 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || | || || || || || || ||||| ||||| |||||| ||| | | Sbjct 11543 AAGATAAGCCTTTGCTGATCAGGTGGGATCCCTTCCTTGTCTTGGATTTTCGCTTTAACA 11484 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | ||| || | |||||||| | || | || || || || |||||||| Sbjct 11483 TTGT-CAATGGTATCTGAACTTTCCACCTCAAGGGTAATGGTCTTGCCGGTGAGAGTTTT 11425 Query 138600 TACAAAAATCTGCATGGCTTATAATAT 138626 |||||||||||||| || |||| || Sbjct 11424 CACAAAAATCTGCAT--CTGATAACAT 11400 >seq14855 Length=14869 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| ||| |||| || || || | | | |||||||| || ||||| ||||| Sbjct 12780 GCCACCTCTCAATCGCAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTATAGTCAGC 12839 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | ||||| |||||||| || | |||| || | ||| ||||||||||| Sbjct 12840 AAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCCGGAGG 12899 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | |||| | || | |||||| | ||||| Sbjct 12900 GATGCCCTCCTTGTC-CTGAATCTTAGCCTTTACATTATCAATGGTGTCTGAACTCTCCA 12958 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || || || ||||| | || |||||||||||||| Sbjct 12959 CTTCCAATGTTATGGTCTTCCCTGTCAGGGCCTTAACAAAAATCTGCAT 13007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495986577358080