Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq41040 111 1e-19 seq43196 105 6e-18 seq14855 104 2e-17 seq32376 89.7 5e-13 seq35664 87.8 2e-12 seq14423 86.0 6e-12 seq40108 82.4 7e-11 seq39663 82.4 7e-11 >seq41040 Length=490441 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | | ||| | ||| || || || ||||||||||| || ||||| Sbjct 179427 ATTCCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCA 179486 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| || || || || | || | || ||||||||||| Sbjct 179487 GCAAGGGTACGCCCATCCTCCAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGT 179546 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| |||||||||||||| || | |||| ||| || ||| ||| Sbjct 179547 GGGATCCCTTCCTTATCTTGAATTTTAGCCTTCACATTGTCTATGGTATCTGAACTCTCA 179606 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||||||||| | || ||||| || || || || ||||| ||||||||| Sbjct 179607 ACTTCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCATC 179657 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | | ||| | ||| || || || || |||||||| || ||||| Sbjct 173539 ATTCCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCTTTTTGGATGTTGTAATCA 173598 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| || || || | | || | || ||||||||||| Sbjct 173599 GCAAGGGTACGCCCATCCTCCAGCTGCTTGCCAGAAAAAATGAGACGCTGCTGGTCCGGT 173658 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| |||||||||||||| || | |||| ||| || ||| ||| Sbjct 173659 GGGATCCCTTCCTTATCTTGAATTTTAGCCTTCACATTGTCTATGGTATCTGAACTCTCA 173718 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||||| || ||||| || || || || ||||| ||||||||| Sbjct 173719 ACTTCAAGAGTAATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCATC 173769 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| || || || ||||| || || ||||| |||||||| Sbjct 178743 ATACCACCACGGAGTCGCAACACAAGGTGGAGAGTTGACTCTTTCTGGATGTTATAATC- 178801 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || | | || | ||| || | |||||| || ||| | || | | |||||| || | Sbjct 178802 -TGCCAGAGTTCGGCCATCCTCAAGTTGTTTGCCCGCGAAAATAAGCCTTTGCTGATCTG 178860 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || || || ||||||||||| || | || | |||||| ||| || Sbjct 178861 GGGGAATACCCTCCTTGTCTTGAATTTTGGCCTTCACATTGTCAATGGTGTCAGAACTCT 178920 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || | || || || || || || || ||||| |||||||| Sbjct 178921 CCACCTCAAGGGTGATTGTCTTTCCTGTGAGGGTCTTGACAAAGATTTGCAT 178972 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 45117 CCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACG 45176 || ||||| | |||||| || || || ||||| || || ||||| |||||||| || | Sbjct 167530 CCACGGAGTCGCAACACAAGGTGGAGAGTTGACTCTTTCTGGATGTTATAATC--TGCCA 167587 Query 45177 GTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAA 45234 | || | ||| || | ||||| || ||| | || | | |||||| || || |||| Sbjct 167588 GAGTTCGGCCATCCTCAAGCTGTTTGCCAGCGAAAATAAGCCTTTGCTGATCTGGGGGAA 167647 Query 45235 TGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACT 45293 | || || || ||||||||||| || | || | || | |||||| ||| ||| || Sbjct 167648 TACCCTCCTTGTCTTGAATTTTGGCCTTCA-CGTTGTCAATGGTGTCAGAACTCTCCACC 167706 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || || | || || || ||||| |||||||| Sbjct 167707 TCAAGGGTGATTGTCTTTCCTATGAGGGTCTTGACAAAGATTTGCAT 167753 >seq43196 Length=72091 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || || || || ||||| ||||| ||||| || || ||| Sbjct 32975 ATGCCTCCCCTGAGACGGAGGACAAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCG 33034 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || | || ||||| ||| | ||||| | ||||||||||| Sbjct 33035 GCGAGGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGG 33094 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || ||||| || | | |||| | | || | || | ||||||||| ||| Sbjct 33095 GGAATCCCCTCCTTATCCTGGA-TCTTTGCCTTAACGTTGTCGATGGTGTCGGAGCTCTC 33153 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| |||||||| | || || ||||| || || || || || || |||||| Sbjct 33154 GACCTCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATC 33205 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || || || | | ||| || || || || || ||||| || || || || || Sbjct 32065 TCCACCACGAAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGC 32124 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| | ||| ||||| || || ||||| | ||||| | ||||||||||| || Sbjct 32125 AAGGGTCCTTCCATCCTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGG 32184 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 || ||||| || |||||||||||| || | || | || | ||| ||||| ||| | Sbjct 32185 GATACCTTCCTTGTCTTGAATTTTTGCCTTCA-CGTTGTCAATGGTATCGGAGCTCTCCA 32243 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || |||| || || || || | || || ||||| || ||||| Sbjct 32244 CCTCCAGGGTAATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 32292 >seq14855 Length=14869 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||| ||||||||||| || || || | ||| | ||| ||| Sbjct 13255 ACGAGGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGACCATCCTCC 13314 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || || | ||||| | |||||| || || || || ||||| || ||||| Sbjct 13315 AATTGCTTCCCAGCAAAGATCAACCTTTGCTGATCAGGTGGGATCCCTTCCTTGTCTTGG 13374 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || ||| | || | || | ||| || ||| ||| || |||||||| | || || Sbjct 13375 ATCTTAGCTTTCA-CGTTGTCAATGGTATCTGAACTCTCTACCTCGAGAGTGATTGTCTT 13433 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||| ||||| || || ||||||||| Sbjct 13434 CCCGGTTAGGGTTTTCACGAAGATTTGCATC 13464 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || |||| ||| || | ||||| || || ||||| ||||| |||||||| Sbjct 12322 ATCCCACCACGAAGCCGCAAAACCAAGTGCAGTGTAGACTCCTTCTGGATGTTATAATCT 12381 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| ||||| || || || || | || | || ||||| ||||| Sbjct 12382 GAAAGGGTTCTTCCATCTTCCAACTGCTTCCCAGCAAAGATAAGTCTCTGCTGATCCGGA 12441 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| ||||| ||||| || ||| | || | || || ||| ||| Sbjct 12442 GGGATACCTTCCTTATCCTGAATCTTAGCTTTCACATTGTCAATTGTATCAGAACTCTCA 12501 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||| | || || || || | || || ||||||||||||||| Sbjct 12502 ACCTCCAGAGTTATGGTCTTCCCCGTCAATGTCTTCACAAAAATTTGCATC 12552 >seq32376 Length=6472 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || ||||| || |||||||||||||| || || ||| | ||| | | ||| || Sbjct 787 ACGAGGTGCAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCAAGGGTGTGACCATCCTCT 846 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || || | || | || ||||| || || || || ||||| || ||||| Sbjct 847 AATTGCTTGCCAGCAAAGATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTGG 906 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || ||| | || | || | ||| || ||| ||| || || | || | || || Sbjct 907 ATCTTAGCTTTCA-CGTTGTCAATGGTATCCGAACTCTCCACCTCCAAGGTGATGGTCTT 965 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||||||||| ||||| || |||||| Sbjct 966 ACCTGTTAGAGTTTTCACAAAGATCTGCATC 996 >seq35664 Length=12214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT-C 45169 || || ||||| ||||| | || ||||| || ||||||||||| ||||| || |||| | Sbjct 8546 ATACCACCGCGAAGCCTGAGGACAAGATGAAGAGTTGATTCCTTCTGGATGTTGTAATCC 8487 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | |||| ||| |||| || ||||| ||| | ||||| || ||||| ||||| Sbjct 8486 GCT-AGGGTTCGCCCATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCCGG 8428 Query 45230 CGGAATGCCT 45239 ||||||||| Sbjct 8427 TGGAATGCCT 8418 >seq14423 Length=23748 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| || | ||| || | ||||| || |||||||| |||||||||||||| Sbjct 12551 ATTCCACCGCGAAGTCGCAAAACCAAGTGCAGAGTGGATTCCTTCTGGATATTATAATCA 12492 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || || || || | || | | ||||||||||| Sbjct 12491 GCAAGGGTCCGCCCATCTTCCAACTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGT 12432 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || ||||| || || || || || | || | ||| || ||| ||| Sbjct 12431 GGGATACCCTCTTTGTCCTGGATCTTCGCCTTAACATTATCAATGGTATCAGAACTCTCA 12372 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| || || || |||| ||| || |||||||| ||||| Sbjct 12371 ACCTCCAAGGTAATGGTCTTCCCAGTTAAAGTCTTCACAAAAATCTGCAT 12322 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAATTG 45196 || || || || ||||| |||||||| ||||| ||| | ||| | ||| || | || Sbjct 12068 TGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCT-AGGGTCCTTCCATCCTCAAGCTG 12010 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || || | || | | |||||||| || || ||||| |||||||| || || || Sbjct 12009 TTTCCCGGCAAAAATAAGCCTCTGCTGGTCTGGAGGGATGCCCTCTTTATCCTGGATCTT 11950 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | |||||| || || || || ||||| || | ||||| || || Sbjct 11949 CGCCTTGACATTGTCAATGGTGTCCGAGGATTCAACCTCGAGGGTGATGGTTTTCCCTGT 11890 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || |||||||||||||| Sbjct 11889 CAAGGTCTTGACAAAAATTTGCAT 11866 >seq40108 Length=192235 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAG--AATCGT 45189 || |||||||| || ||||||||||| ||||| |||| ||| | || | | ||| | Sbjct 160983 ACAAGATGCAGAGTGGATTCCTTTTGAATATTGTAAT--CTGCCAGTGTACGTCCATCTT 160926 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 |||| || || || ||| | || | ||| |||||||| || ||||| || || || || | Sbjct 160925 CCAACTGCTTACCAGCGAAAATAAGTCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCT 160866 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | || ||| ||| | || | || || || || || || | |||| || | Sbjct 160865 GGATCTTTGCTTTCACATTATCAATCGTATCAGAGCTTTCCACCTCTAAGGTAATGGTCT 160806 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || |||| || || |||||||||||||| Sbjct 160805 TTCCTGTTAAGGTCTTGACAAAAATTTGCAT 160775 >seq39663 Length=443811 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || || |||||||| || || ||||| |||||||||||||| Sbjct 344574 CCACCACGAAGGCGCAGGACAAGATGCAGGGTGGACTCCTTCTGGATATTATAATCTGCC 344633 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| ||||| || || || || | |||| ||| |||||||| || ||| Sbjct 344634 AAAGTTCGACCATCCTCCAACTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGGA 344693 Query 45234 ATGCCTTCTTTATCTTGAATTTT 45256 || || ||||| || ||||| || Sbjct 344694 ATACCCTCTTTGTCCTGAATCTT 344716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451751976621440