Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq42527 134 2e-26 seq36964 134 2e-26 seq37024 131 2e-25 seq1704 131 2e-25 seq32367 123 3e-23 seq37232 98.7 1e-15 seq32508 96.9 4e-15 seq44058 82.4 9e-11 seq40957 82.4 9e-11 seq36378 82.4 9e-11 >seq42527 Length=94160 Score = 134 bits (148), Expect = 2e-26 Identities = 158/213 (74%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || ||||||||||| || || || || || || || || || ||||||||||| Sbjct 57980 GTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAAACGTGAGCCCCGGCATGAGACC 57921 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || ||||||| ||||||||| || || || || |||||||||||||| |||||||| Sbjct 57920 GCGTTTCTTCAGCCAGAAAATGGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACACA 57861 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| || | |||||||| || |||||| || | | || | ||| |||| ||| Sbjct 57860 GGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGG---TGGCGTCGATCCATTTCAACGC 57804 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGT 127743 ||||| || || |||| || || |||| ||| Sbjct 57803 CCACTCGGCTTTCTTCTTGACGCAGGGGATGGT 57771 >seq36964 Length=242943 Score = 134 bits (148), Expect = 2e-26 Identities = 158/213 (74%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || ||||||||||| || || || || || || || || || ||||||||||| Sbjct 59763 GTGAAGCCCCTCGTCACGTGAAATCAGCTCGTTGGAAAACGTGAGCCCCGGCATGAGACC 59704 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || ||||||| ||||||||| || || || || |||||||||||||| |||||||| Sbjct 59703 GCGTTTCTTCAGCCAGAAAATGGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACACA 59644 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| || | |||||||| || |||||| || | | || | ||| |||| ||| Sbjct 59643 GGCGAAAGCGACGAGACGCTCCGCGAAGGAGTCGG---TGGCGTCGATCCATTTCAACGC 59587 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGT 127743 ||||| || || |||| || || |||| ||| Sbjct 59586 CCACTCGGCTTTCTTCTTGACGCAGGGGATGGT 59554 >seq37024 Length=156878 Score = 131 bits (144), Expect = 2e-25 Identities = 168/231 (73%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || |||||||| || ||||| || || || ||||| || || ||||||||||| Sbjct 283 GTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGAACGTGAGCCCCGGCATGAGACC 224 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || || ||||||||||| ||||| || || || |||||||||||||| ||||| || Sbjct 223 GCGTTTTTTCAACCAGAAGATCGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACGCA 164 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| |||| | ||||| || ||||| || || || | ||| |||||||| Sbjct 163 GGCGAAGGCAACCACCCGCTCCGCGAAGGAATCCGA---TGCGTCGATCCATTTCATCGC 107 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 ||||| || || ||| ||| || |||| ||| | || || | ||||| Sbjct 106 CCACTCGGCTTTCTTCGCGACGCAGGGGATGGTTTCGACGGCGTGGAAGAG 56 >seq1704 Length=114806 Score = 131 bits (144), Expect = 2e-25 Identities = 168/231 (73%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || |||||||| || ||||| || || || ||||| || || ||||||||||| Sbjct 97632 GTGAAGCCCCTCGTCGCGTGAGATCAGCTCGTTGGAGAACGTGAGCCCCGGCATGAGACC 97573 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || || ||||||||||| ||||| || || || |||||||||||||| ||||| || Sbjct 97572 GCGTTTTTTCAACCAGAAGATCGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACGCA 97513 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| |||| | ||||| || ||||| || || || | ||| |||||||| Sbjct 97512 GGCGAAGGCAACCACCCGCTCCGCGAAGGAATCCGA---TGCGTCGATCCATTTCATCGC 97456 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 ||||| || || ||| ||| || |||| ||| | || || | ||||| Sbjct 97455 CCACTCGGCTTTCTTCGCGACGCAGGGGATGGTTTCGACGGCGTGGAAGAG 97405 >seq32367 Length=12065 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| ||||||||||||||||| || || || ||||| || || |||||||| || Sbjct 2413 GTGGAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAATGTTAGCCCCGGCATGAGGCC 2472 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| |||||| || || || || || ||||||||||| || |||||||| Sbjct 2473 GCGCTTCTTCAGCCAGAAGATGGCGCAGAAGCTCCCGGAGAAGAAGATTCCTTCCACACA 2532 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||||||||| | || || || || ||| Sbjct 2533 CGCGAACGCGACAAGCCGTTCCGCGAAG 2560 >seq37232 Length=10575 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| || ||||||||||| || || | || || || || || || Sbjct 7156 AGCAAAATCACAGTGAAGCCCCTCGTCACGTGAAATCAACTCGTTGGAAAACGTGAGCCC 7097 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| || ||||||| ||||||||||||||| || || ||||||||||| Sbjct 7096 CGGCATGAGACCGCGTTTCTTCAGCCAGAAAATCGCACAGAAGCTCCCGGAGAAGAAGAT 7037 Query 127639 CCCCTCCAC 127647 ||| ||||| Sbjct 7036 CCCTTCCAC 7028 >seq32508 Length=19167 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/220 (71%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA-CCT-GGCATGAGA 127588 |||||| ||||| |||| ||||||| || || ||| | | || ||| |||||||| Sbjct 4083 GTGGAGGCCCTCATCACACAAGATGAGCTCGTTAGAGTA--AGTGATCCTCGGCATGAGG 4140 Query 127589 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 || |||||||| | | || | || || || || ||||||||||||||||| |||| Sbjct 4141 CCGCGCTTCTTGAGCTAGTAGATAGCGCAGAAGCTACCAGAGAAGAAGATCCCTTCCATG 4200 Query 127649 CACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATC 127708 ||||| ||||| | | | || |||||||| ||| | | | ||| |||| | Sbjct 4201 CACGCAAACGCGACGAAGCATTCTGCAAAGGAATCGGA---GGAGTTGATCCATTTCAGC 4257 Query 127709 GCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGA 127748 ||||||| |||||| || ||| || |||| ||||| || Sbjct 4258 GCCCACTCTGCCTTCTTGGCGACGCAGGGGATGGTCTCGA 4297 >seq44058 Length=119181 Score = 82.4 bits (90), Expect = 9e-11 Identities = 193/284 (68%), Gaps = 12/284 (4%) Strand=Plus/Minus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CG 12846 || || || ||||| || |||| ||||| || | ||| ||||| | ||||||||| | Sbjct 58867 TCAAACCCGTCCATTTCTGTCAGAAGTTGGTTCAGGGTCTGTTCTCTTTCATCATTTCCT 58808 Query 12847 CGGGCA-TACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACG 12905 | | || | ||| |||| | |||| | || || || |||||||| |||| ||||| Sbjct 58807 CCGCCAATTCCA---GCACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACA 58751 Query 12906 ATACACGGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGA 12963 || || || ||| || ||| |||| || | ||| || |||| ||||| | Sbjct 58750 ATGCAGGGAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGAACTCGAGAAGCACCAA 58693 Query 12964 CACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGAT 13022 ||| ||||||||||| ||||| | | | | | |||| || || ||||| | | Sbjct 58692 TACCAACAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAATGGGACACCTGCT 58634 Query 13023 TCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 ||||| || || || ||| | || |||||||| |||||||| Sbjct 58633 TCACCAGCAATAGCCTTGGCTAATAGCGTCTTCCCAGTCCCTGG 58590 >seq40957 Length=105852 Score = 82.4 bits (90), Expect = 9e-11 Identities = 243/369 (66%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763 |||||| || || || | || | ||| |||||| || ||| | ||| || || || Sbjct 5508 ATCAAACCGGCCAGGTCTCAGTAAGGCAGAGTCAAGAATGTCAGCCCTGTTAGTTGCAGC 5449 Query 12764 GATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 12823 | ||||| ||| || || | || || |||||||| || ||||| ||||| |||| Sbjct 5448 AACGACAATGATACCGGTATTACCCTCAAACCCATCCATTTCTGTCAAAAGTTGGTTGAG 5389 Query 12824 GGTTTGTTCACGTTCATCATTCGCGGGC---ATACCACCCGCACTGCGTTGCTTACCGAC 12880 ||| ||||| | |||||||||| | || ||| | | || ||| | || || Sbjct 5388 GGTCTGTTCTCTTTCATCATTCCCTCCACCAATTCCAGTCCCTCT---TTGTCTCCCAAC 5332 Query 12881 GGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA--AAG 12938 || |||||||| |||| || || || || || ||| || ||| |||| || Sbjct 5331 AGCATCAATTTCATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGC--CTTCTTGAAC 5274 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 12998 | ||| || |||| || || ||||| ||||||||||| ||||| | | | | | Sbjct 5273 AAATCACGGACTCGAGAAGCGCCAACACCAACAAACATCTCAACAAACTCAGAACCAG-A 5215 Query 12999 CATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 13057 |||| || || || || || |||||| || || || ||| | | ||||||||| Sbjct 5214 TATTGAGAAAAACGGAACTCCGGCTTCACCGGCAATAGCCTTGGCTAACAAGGTCTTCCC 5155 Query 13058 CGTCCCTGG 13066 || || || Sbjct 5154 AGTTCCGGG 5146 >seq36378 Length=63125 Score = 82.4 bits (90), Expect = 9e-11 Identities = 197/295 (67%), Gaps = 10/295 (3%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGC-GGG 12850 |||||||||||||| |||||||| || || || || || || | ||||||||| | Sbjct 47857 AAGCCATCCATCTCTGTCAAGAGCTGGTTAATTGTCTGCTCCCTCTCATCATTCCCACCA 47798 Query 12851 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 | | | ||||| | | ||| | || || || ||||| || |||||||| || || || Sbjct 47797 CCGAGC-CCCGCCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATGAACACAATGCA 47739 Query 12911 CGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 12966 ||| || |||| || ||||| | ||| | ||| || ||||| || | Sbjct 47738 CGGTGCCTTCGATTTC----GCCTTCTCAAACAAATCCCTCACCCTGGACGCACCAACCC 47683 Query 12967 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCAC 13026 ||||||| | |||||| || | | || | || || ||| || | || ||||| Sbjct 47682 CCACAAAGAGCTCCACGAACTCAGAAGCCGCGCACGAGAAGAACGGCGTGCCGGCTTCAC 47623 Query 13027 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAG 13081 | || | |||| || || ||||||||||| || || ||| ||| | ||||| Sbjct 47622 CAGCCACCGCTCTCGCCAGAAGGGTCTTCCCTGTTCCCGGTGGCCCAACCAGAAG 47568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613166212698240