Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq38321 116 4e-21 seq43196 113 5e-20 seq14423 102 9e-17 seq39663 91.5 2e-13 seq14855 89.7 6e-13 seq40108 84.2 2e-11 >seq38321 Length=259108 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || ||||| |||| || |||||||| |||||||| Sbjct 81901 CTCCTTCTGGATGTTGTAGTCAGCAAGTGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAA 81960 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| |||||| ||||| ||| Sbjct 81961 GATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGT 82019 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || ||||| || | ||||| || || ||||| || ||||| | Sbjct 82020 TGTCGATTGTGTCGGATGACTCCACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCA 82079 Query 46581 CAAAGATTTGCATTTT 46596 | ||||| ||||| || Sbjct 82080 CGAAGATCTGCATCTT 82095 >seq43196 Length=72091 Score = 113 bits (124), Expect = 5e-20 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| | ||||| | || |||||||||||||||||||| Sbjct 32785 CTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAA 32844 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||| || | || | | |||||||||| |||||| ||||| ||| Sbjct 32845 GATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGT 32903 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| ||| || || | |||||||| ||||| || || || | Sbjct 32904 TGTCAATAGTGTCAGAGCT---TTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCT 32960 Query 46578 TAACAAAGATTTGCAT 46593 | || ||||| ||||| Sbjct 32961 TCACGAAGATCTGCAT 32976 Score = 109 bits (120), Expect = 6e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | ||| | || || || | ||| ||||| ||||| |||||||| | Sbjct 32522 CCTCCCCTCAGACGAAGGACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGCA 32581 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || ||||||||||||||||| || ||||| | ||||||||| | || Sbjct 32582 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGG 32641 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||||||||| |||||| ||||| ||| | | | ||||| |||| || Sbjct 32642 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGA-CGTTGTCGATGGTGTCAGAGCTC---TC 32697 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| ||||| |||| || || || ||||| ||||| Sbjct 32698 AACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 32748 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | ||||| ||| ||||| | || |||||| ||||| ||||| || | Sbjct 32294 CCTCCCCTGAGACGCAGCACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGCA 32353 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || ||||||||||| || || || ||||| | |||||| || | || Sbjct 32354 AGAGTCCTTCCATCCTCGAGCTGCTTACCAGCAAAAATCAACCTCTGCTGATCCGGGGGA 32413 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | |||||| ||| |||||| ||| | ||| | | | ||||| |||| || Sbjct 32414 ATACCCTCCTTATCCTGGATCTTAGCCTTCA-CGTTGTCAATGGTGTCAGAGCTC---TC 32469 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || | |||||||| || || |||| || || || || || ||||| Sbjct 32470 CACCTCAAGAGTGATGGTCTTACCAGTCAAAGTCTTCACGAAAATCTGCAT 32520 >seq14423 Length=23748 Score = 102 bits (112), Expect = 9e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| || || | ||||| || | || |||||| ||||||||||| || | Sbjct 12094 TGCCACCTCTCAATCGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAG 12035 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||| || | | || || ||||| || ||||| || || | | ||||||||| | | Sbjct 12034 CTAGGGTCCTTCCATCCTCAAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGGTCTGGAG 11975 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| || ||| ||||||| ||||| | | | ||||| ||||| | Sbjct 11974 GGATGCCCTCTTTATCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCCGAGGATTCAA 11915 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||||||||||| || |||| || || ||||| |||||||| Sbjct 11914 CCTCGAGGGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAAATTTGCAT 11866 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| || || | ||||| ||| | || |||||| ||||| ||||| || | Sbjct 11866 TGCCACCTCTCAATCGAAGCACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAG 11807 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||| || | | || || || || || || || || ||||| | |||||| || | | Sbjct 11806 CTAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAAAATCAACCTCTGCTGATCTGGAG 11747 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| || ||| ||||||| ||||| | | | ||||| || || | Sbjct 11746 GGATGCCCTCTTTATCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCCGAGGACTCAA 11687 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||||||||||| || |||| || ||||||||||| ||||| Sbjct 11686 CCTCAAGGGTGATGGTTTTCCCAGTCAAAGTCTTAACAAAGATCTGCAT 11638 >seq39663 Length=443811 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||||| || |||||| |||||||| || || | | ||| || | Sbjct 344586 CGCAGGACAAGATGCAGGGTGGACTCCTTCTGGATATTATAATCTGCCAAAGTTCGACCA 344645 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | ||||||||| || || |||| ||||||||||| | || | | ||| ||| Sbjct 344646 TCCTCCAACTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGGAATACCCTCTTTG 344705 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | | | | || ||| |||||| |||| || ||| Sbjct 344706 TCCTGAATCTTCGCCTTAACATTGTCAATTGTATCGGAGCTTTCCACCTCCAATGTAATG 344765 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || |||| || || |||||||||||||| Sbjct 344766 GTCTTCCCTGTCAAGGTCTTCACAAAGATTTGCAT 344800 >seq14855 Length=14869 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| || || | ||||| ||| | ||| ||||| ||||| ||||| || | Sbjct 13009 CCACCTCTCAATCGAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCA 13068 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | || || |||||||| || || || ||||| | ||||| || | || Sbjct 13069 AGGGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAAATCAACCTTTGCTGATCCGGAGGA 13128 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| ||||| ||||||| ||||| | | | ||||| ||||| || Sbjct 13129 ATACCCTCTTTGTCTTGGATCTTCGCCTTGACATTATCGATAGTGTCTGAGGATTCAACC 13188 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||||| || |||| || || |||||||| ||||| Sbjct 13189 TCGAGGGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 13235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||||| || |||||| || ||||| || || | ||||| || | Sbjct 12109 CGCAGGACAAGATGCAGGGTGGACTCCTTCTGAATATTATAATCAGCCAGAGTACGTCCA 12168 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | ||||||||| || || |||| | ||||||||| | || | | ||||||| Sbjct 12169 TCCTCCAACTGCTTGCCAGCAAAAATCAGTCTCTGCTGGTCTGGAGGAATACCCTCCTTG 12228 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTG 46555 || ||||||| ||| | | | | || || ||| |||||| |||| ||| Sbjct 12229 TCTTGGATCTTCGCCTTAACATTGTCAATTGTATCAGAGCT---TTCCACCTCCAATGTG 12285 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || |||| || || |||||||||||||| Sbjct 12286 ATAGTCTTCCCTGTCAAGGTCTTCACAAAGATTTGCAT 12323 >seq40108 Length=192235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| || || | |||| ||| | || |||||| ||||| ||||| || | Sbjct 160547 TGCCGCCTCTCAATCGAAGAACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAG 160488 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || | | | || || || || || || || || || | | ||||||||||| | Sbjct 160487 CCAAGGTCCTCCCATCCTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGCTGGTCGGGTG 160428 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||| |||||| |||||| ||||| | | | ||||| ||||| | Sbjct 160427 GTATACCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCTGAGGATTCGA 160368 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||||||||||| || |||| || || |||||||| ||||| Sbjct 160367 CCTCGAGGGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 160319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564924240497280