Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq39663 96.9 2e-15 seq32376 84.2 2e-11 seq14855 82.4 5e-11 >seq39663 Length=443811 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||||| || | ||||| ||| || || || ||||||||||| || Sbjct 344573 GCCACCACGAAGGCGCAGGACAAGATGCAGGGTGGACTCCTTCTGGATATTATAATCTGC 344632 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| || |||| ||||| || || || ||||||| | |||||||| || | || Sbjct 344633 CAAAGTTCGACCATCCTCCAACTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGG 344692 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| || || |||| | | | ||| || | ||||||||| Sbjct 344693 AATACCCTCTTTGTCCTGAATCTTCGCCTTAACATTGTCAATTGTATCGGAGCTTTCCAC 344752 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||| || || || || || || || || ||||| ||||| Sbjct 344753 CTCCAATGTAATGGTCTTCCCTGTCAAGGTCTTCACAAAGATTTGCAT 344800 >seq32376 Length=6472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | |||| |||||||||||||| || || || || |||||||| || Sbjct 84 GCCACCACGAAGCCGCAAGACCAAATGCAAAGTAGACTCCTTCTGAATGTTATAATCAGC 143 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | |||| || | || |||||| |||| || | | ||||||||| | || Sbjct 144 AAGAGTTCTACCATCTTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGCGG 203 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||| || || || || ||| ||| | | | | || |||| |||||||| Sbjct 204 GATGCCCTCCTTATCCTGAATCTTTGCTTTCACATTATCAATAGTATCTGAACTTTCCAC 263 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||||||||||||| || || || || || || || || || |||||| Sbjct 264 CTCCAAAGTAATTGTCTTTCCTGTCAAGGTCTTGACAAAAATTTGCATG 312 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| ||| ||||| |||||||| | || || || || || || ||||| || Sbjct 540 GCCACCTCTCAATCGCAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGC 599 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| | | |||| || | ||||||||| ||||||| | | ||| ||||| | || Sbjct 600 CAAGGTCCTTCCATCTTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGTTGATCTGGAGG 659 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCA 39670 | || |||||||| | | |||| || | | | | | || | |||| | ||| | Sbjct 660 GATACCCTCTTTGTC-CTGAATTTTCGTCTTCACATTGTCAATGGTATCTGAGGATTCGA 718 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || | || || ||||| || || ||||| || || |||||||||||| Sbjct 719 CCTCAAGGGTGATGGTTTTCCCAGTCAAAGTCTTGACAAAGATCTGCATG 768 >seq14855 Length=14869 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||||| || | ||||| ||| || || || ||||||||||| || Sbjct 12096 GCCACCACGAAGGCGCAGGACAAGATGCAGGGTGGACTCCTTCTGAATATTATAATCAGC 12155 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| ||||| || || || ||||||| | | |||||| || | || Sbjct 12156 CAGAGTACGTCCATCCTCCAACTGCTTGCCAGCAAAAATCAGTCTCTGCTGGTCTGGAGG 12215 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| || || |||| | | | ||| || | ||||||||| Sbjct 12216 AATACCCTCCTTGTCTTGGATCTTCGCCTTAACATTGTCAATTGTATCAGAGCTTTCCAC 12275 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || || || || || || ||||| ||||| Sbjct 12276 CTCCAATGTGATAGTCTTCCCTGTCAAGGTCTTCACAAAGATTTGCAT 12323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347181358676912